Evidence map›Paper›PMID 16533844›Full record

ArticleBiophysical journal2006

Computational modeling of extracellular mechanotransduction.

Nikola Kojić, Milos Kojić, Daniel J Tschumperlin

Abstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. The Aftermath of Bronchoconstriction.Journal of engineering and science in medical diagnostics and therapy · 2019
    Review
  2. Cell Jamming in the Airway Epithelium.Annals of the American Thoracic Society · 2016
    Review
  3. Article
  4. Putting the Squeeze on Airway Epithelia.Physiology (Bethesda, Md.) · 2015
    Review
  5. Article
  6. Article
  7. Article
  8. An EGFR autocrine loop encodes a slow-reacting but dominant mode of mechanotransduction in a polarized epithelium.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2010
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nikola KojićHarvard-MIT Division of Health Sciences and Technology, Cambridge, MA, USA.
Milos Kojić
Daniel J Tschumperlin

Funding

RESISTANCE OF THE CELL TO SHAPE DISTORTION--BASIS OF CYTOSKELETAL MECHANICSP01HL033009 · NHLBI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI ROGERS, RICK · 1985 to 2005
$10.0M
NHLBI NIH HHS HL 33009NHLBI NIH HHS P01 HL033009
6 · The paper itself

Abstract

Mechanotransduction may occur through numerous mechanisms, including potentially through autocrine signaling in a dynamically changing extracellular space. We developed a computational model to analyze how alterations in the geometry of an epithelial lateral intercellular space (LIS) affect the concentrations of constitutively shed ligands inside and below the LIS. The model employs the finite element method to solve for the concentration of ligands based on the governing ligand diffusion-convection equations inside and outside of the LIS, and assumes idealized parallel plate geometry and an impermeable tight junction at the apical surface. Using the model, we examined the temporal relationship between geometric changes and ligand concentration, and the dependence of this relationship on system characteristics such as ligand diffusivity, shedding rate, and rate of deformation. Our results reveal how the kinetics of mechanical deformation can be translated into varying rates of ligand accumulation, a potentially important mechanism for cellular discrimination of varying rate-mechanical processes. Furthermore, our results demonstrate that rapid changes in LIS geometry can transiently increase ligand concentrations in underlying media or tissues, suggesting a mechanism for communication of mechanical state between epithelial and subepithelial cells. These results underscore both the plausibility and complexity of the proposed extracellular mechanotransduction mechanism.

Indexed as

Mechanotransduction, CellularModels, BiologicalAnimalsAutocrine CommunicationComputer SimulationEpidermal Growth FactorEpithelial CellsExtracellular SpaceHeparin-binding EGF-like Growth FactorHumansIntercellular Signaling Peptides and ProteinsTransforming Growth Factor alphaEpidermal Growth FactorHBEGF protein, humanHeparin-binding EGF-like Growth FactorIntercellular Signaling Peptides and ProteinsTransforming Growth Factor alpha

Identifiers

PMID16533844
PMCPMC1459528

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.