Evidence map›Paper›PMID 16532396›Full record

ArticleAmerican journal of human genetics2006

Recently mobilized transposons in the human and chimpanzee genomes.

Ryan E Mills, E Andrew Bennett, Rebecca C Iskow, Christopher T Luttig, Circe Tsui, W Stephen Pittard, Scott E Devine

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 160 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. AnNAR genomics and bioinformatics · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Mobile elements contribute to the uniqueness of human genome with 15,000 human-specific insertions and 14 Mbp sequence increase.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Structural Variation ofGenomics & informatics · 2016
    Review
  18. Review
  19. Article
  20. The role of Alu elements in the cis-regulation of RNA processing.Cellular and molecular life sciences : CMLS · 2015
    Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ryan E MillsDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA.
E Andrew Bennett
Rebecca C Iskow
Christopher T Luttig
Circe Tsui
W Stephen Pittard
Scott E Devine
Emory University · USUniversity of Atlanta · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
Natural Genetic Variation in the Human GenomeR01HG002898 · NHGRI · UNIVERSITY OF MARYLAND BALTIMORE · PI DEVINE, SCOTT E · 2004 to 2019
$3.7M
NHGRI NIH HHS 1R01HG002898NHGRI NIH HHS R01 HG002898NIGMS NIH HHS 2T32GM00849NIGMS NIH HHS T32 GM008490
6 · The paper itself

Abstract

Transposable genetic elements are abundant in the genomes of most organisms, including humans. These endogenous mutagens can alter genes, promote genomic rearrangements, and may help to drive the speciation of organisms. In this study, we identified almost 11,000 transposon copies that are differentially present in the human and chimpanzee genomes. Most of these transposon copies were mobilized after the existence of a common ancestor of humans and chimpanzees, approximately 6 million years ago. Alu, L1, and SVA insertions accounted for >95% of the insertions in both species. Our data indicate that humans have supported higher levels of transposition than have chimpanzees during the past several million years and have amplified different transposon subfamilies. In both species, approximately 34% of the insertions were located within known genes. These insertions represent a form of species-specific genetic variation that may have contributed to the differential evolution of humans and chimpanzees. In addition to providing an initial overview of recently mobilized elements, our collections will be useful for assessing the impact of these insertions on their hosts and for studying the transposition mechanisms of these elements.

Indexed as

DNA Transposable ElementsGenomeGenome, HumanAnimalsBase SequenceDNA PrimersHumansPan troglodytesPolymerase Chain ReactionRepetitive Sequences, Nucleic AcidDNA PrimersDNA Transposable Elements

Identifiers

PMID16532396
PMCPMC1424692
OpenAlexW2042081010

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.