Evidence map›Paper›PMID 16528748›Full record

ArticleAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics2006

Suggestive evidence for association of the circadian genes PERIOD3 and ARNTL with bipolar disorder.

Caroline M Nievergelt, Daniel F Kripke, Thomas B Barrett, Elyssa Burg, Ronald A Remick, A Dessa Sadovnick, Susan L McElroy, Paul E Keck, Nicholas J Schork, John R Kelsoe

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In one paragraph

Article in American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed, 1 pooled it
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 1 synthesis or guideline pooled it, 295 citations in OpenAlex.

  1. Pooled it
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  11. Evaluating endophenotypes for bipolar disorder.International journal of bipolar disorders · 2021
    Review
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  14. Article
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58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Caroline M NievergeltDepartment of Psychiatry, University of California, San Diego, La Jolla, California 92093-0603, USA.
Daniel F Kripke
Thomas B Barrett
Elyssa Burg
Ronald A Remick
A Dessa Sadovnick
Susan L McElroy
Paul E Keck
Nicholas J Schork
John R Kelsoe
University of California San Diego · USUniversity of Cincinnati Medical Center · USSt. Paul's Hospital · CAUniversity of British Columbia · CA

Funding

Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI NICHOLAS Joseph SCHORK · 2004 to 2026
$102.6M
ZOVIRAX CREAM TO TREAT HERPES LABIALIS IN ADOLESCENTSM01RR000827 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHANG, R JEFFREY · 1985 to 2010
$74.3M
Phenotyping--vasoactive post synaptic agonist pharmacogU01HL069758 · NHLBI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI O'CONNOR, DANIEL T · 2001 to 2004
$12.1M
SCOR-MOLECULAR GENTICS OF HYPERTENSIONP50HL054998 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI JACOB, HOWARD J · 1996 to 2005
$8.1M
Hypertension PharmacogeneticsR01HL074730 · NHLBI · UNIVERSITY OF FLORIDA · PI JOHNSON, JULIE A. · 2003 to 2006
$3.4M
Genomic studies of bipolar disorder and chromosome 22R01MH068503 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KELSOE, JOHN R. · 2004 to 2008
$3.1M
Genetics of the Sodium-Lithium CountertransportR01HL070137 · NHLBI · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI AVIV, ABRAHAM · 2004 to 2008
$2.9M
ILLUMINATION IN HUMAN AGING: SLEEP AND MOOD EFFECTSR01AG012364 · NIA · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KRIPKE, DANIEL F · 1994 to 2004
$1.9M
COLLABORATIVE GENOMIC STUDY OF BIPOLAR DISORDERR01MH059567 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KELSOE, JOHN R. · 1998 to 2007
$1.8M
PHASE RESPONSE CURVES FOR EXERCISE AND BRIGHT LIGHTR01HL061280 · NHLBI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KRIPKE, DANIEL F · 1999 to 2002
$1.7M
GENETIC VARIANTS IN CIRCADIAN RHYTHM SLEEP DISORDERSR01HL071123 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KRIPKE, DANIEL FREDERICK · 2004 to 2006
$1.4M
VERIFICATION OF CIRCADIAN ABNORMALITIES IN AGINGR01AG015763 · NIA · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KRIPKE, DANIEL F · 1998 to 2002
$1.3M
Intramural NIH HHSNCRR NIH HHS M01 RR000827NCRR NIH HHS M01 RR00827NHLBI NIH HHS HL054998-09NHLBI NIH HHS HL064777-06NHLBI NIH HHS HL069758-03NHLBI NIH HHS HL070137-01A1NHLBI NIH HHS HL071123NHLBI NIH HHS HL074730-02NHLBI NIH HHS HL61280NHLBI NIH HHS P50 HL054998NHLBI NIH HHS R01 HL070137NHLBI NIH HHS R01 HL071123NHLBI NIH HHS R01 HL074730NHLBI NIH HHS R56 HL071123NHLBI NIH HHS U01 HL064777NHLBI NIH HHS U01 HL069758NIA NIH HHS AG023122-01NIA NIH HHS AG12364NIA NIH HHS AG15763NIA NIH HHS R01 AG012364NIA NIH HHS R01 AG015763NIA NIH HHS U19 AG023122NIDA NIH HHS DA13769NIMH NIH HHS K08 MH067959NIMH NIH HHS MH059567-05A2NIMH NIH HHS MH067959NIMH NIH HHS MH068503-01A1NIMH NIH HHS MH47612NIMH NIH HHS MH59567NIMH NIH HHS MH68503NIMH NIH HHS R01 MH059567NIMH NIH HHS R01 MH068503NIMH NIH HHS U01 MH46274NIMH NIH HHS UO1 MH46280NIMH NIH HHS UO1 MH46282PHS HHS HLMH065571-02
6 · The paper itself

Abstract

Bipolar affective disorder (BPAD) is suspected to arise in part from malfunctions of the circadian system, a system that enables adaptation to a daily and seasonally cycling environment. Genetic variations altering functions of genes involved with the input to the circadian clock, in the molecular feedback loops constituting the circadian oscillatory mechanism itself, or in the regulatory output systems could influence BPAD as a result. Several human circadian system genes have been identified and localized recently, and a comparison with linkage hotspots for BPAD has revealed some correspondences. We have assessed evidence for linkage and association involving polymorphisms in 10 circadian clock genes (ARNTL, CLOCK, CRY2, CSNK1epsilon, DBP, GSK3beta, NPAS2, PER1, PER2, and PER3) to BPAD. Linkage analysis in 52 affected families showed suggestive evidence for linkage to CSNK1epsilon. This finding was not substantiated in the association study. Fifty-two SNPs in 10 clock genes were genotyped in 185 parent proband triads. Single SNP TDT analyses showed no evidence for association to BPAD. However, more powerful haplotype analyses suggest two candidates deserving further studies. Haplotypes in ARNTL and PER3 were found to be significantly associated with BPAD via single-gene permutation tests (PG = 0.025 and 0.008, respectively). The most suggestive haplotypes in PER3 showed a Bonferroni-corrected P-value of PGC = 0.07. These two genes have previously been implicated in circadian rhythm sleep disorders and affective disorders. With correction for the number of genes considered and tests conducted, these data do not provide statistically significant evidence for association. However, the trends for ARNTL and PER3 are suggestive of their involvement in bipolar disorder and warrant further study in a larger sample.

Indexed as

ARNTL Transcription FactorsBasic Helix-Loop-Helix ProteinsBipolar DisorderChromosome MappingCircadian RhythmFamily HealthFemaleGenetic Predisposition to DiseaseGenotypeHaplotypesHumansLinkage DisequilibriumMaleMicrosatellite RepeatsNuclear ProteinsPeriod Circadian ProteinsARNTL Transcription FactorsBasic Helix-Loop-Helix ProteinsBMAL1 protein, humanNuclear ProteinsPER3 protein, humanPeriod Circadian ProteinsTranscription Factors

Identifiers

PMID16528748
PMCPMC2651679
OpenAlexW2099766655

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.