Evidence map›Paper›PMID 16522795›Full record

ArticleProtein science : a publication of the Protein Society2006

New Escherichia coli outer membrane proteins identified through prediction and experimental verification.

Paola Marani, Samuel Wagner, Louise Baars, Pierre Genevaux, Jan-Willem de Gier, Ingmarie Nilsson, Rita Casadio, Gunnar von Heijne

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 46 citations in OpenAlex.

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  11. Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.Protein science : a publication of the Protein Society · 2015
    Review
  12. Article
  13. Article
  14. Multitasking SecB chaperones in bacteria.Frontiers in microbiology · 2014
    Review
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Paola MaraniDepartment of Biochemistry and Biophysics, Stockholm University, SE-106 91 Stockholm, Sweden.
Samuel Wagner
Louise Baars
Pierre Genevaux
Jan-Willem de Gier
Ingmarie Nilsson
Rita Casadio
Gunnar von Heijne
Stockholm University · SEUniversity of Bologna · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many new Escherichia coli outer membrane proteins have recently been identified by proteomics techniques. However, poorly expressed proteins and proteins expressed only under certain conditions may escape detection when wild-type cells are grown under standard conditions. Here, we have taken a complementary approach where candidate outer membrane proteins have been identified by bioinformatics prediction, cloned and overexpressed, and finally localized by cell fractionation experiments. Out of eight predicted outer membrane proteins, we have confirmed the outer membrane localization for five-YftM, YaiO, YfaZ, CsgF, and YliI--and also provide preliminary data indicating that a sixth--YfaL--may be an outer membrane autotransporter.

Indexed as

Bacterial Outer Membrane ProteinsBacterial ProteinsCell FractionationCloning, MolecularComputational BiologyEscherichia coliEscherichia coli ProteinsMembrane Transport ProteinsProteomeBacterial Outer Membrane ProteinsBacterial ProteinsEscherichia coli ProteinsMembrane Transport ProteinsProteomeSecB protein, BacteriaYfaL protein, E coli

Identifiers

PMID16522795
PMCPMC2242486
OpenAlexW2087499595

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.