Evidence map›Paper›PMID 16520956›Full record

ArticleChromosoma2006

Conserved linkage of two genes on the same macronuclear chromosome in spirotrichous ciliates.

Craig P McFarland, Wei-Jen Chang, Shiuhyang Kuo, Laura F Landweber

Abstract read
PubMed Publisher
In one paragraph

Article in Chromosoma, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Craig P McFarlandDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.
Wei-Jen Chang
Shiuhyang Kuo
Laura F Landweber
Princeton University · US

Funding

UNDERSTANDING COMPLEX GENE EDITING SYSTEMS IN PROTISTSR01GM059708 · NIGMS · PRINCETON UNIVERSITY · PI LANDWEBER, LAURA F · 1999 to 2016
$4.4M
NIGMS NIH HHS GM59708
6 · The paper itself

Abstract

Macronuclear chromosomes of spirotrichous ciliates are mainly "nanochromosomes" containing only a single gene. We identified a two-gene chromosome in the spirotrich Sterkiella histriomuscorum (formerly Oxytricha trifallax) which, unlike other characterized two-gene molecules, contains reading frames oriented tail to tail. These are homologs of ribosomal protein L29 (RPL29) and cyclophilin. We found that both genes are transcribed, with their polyadenylation sites on opposite strands separated by only 135 bp. Furthermore, both genes in S. histriomuscorum are present only on one macronuclear chromosome and do not occur alone or linked to other genes. The corresponding micronuclear locus is fragmented into three nonscrambled gene segments (MDSs), separated by two noncoding segments (IESs). We also found that these two genes are linked on a macronuclear chromosome, similarly arranged tail to tail, in the three spirotrichs Stylonychia lemnae, Uroleptus sp., and Holosticha sp.. In addition, single-gene macronuclear chromosomes containing only the RPL29 gene were detected in the earlier diverged Holosticha and Uroleptus. These observations suggest a possible evolutionary trend towards loss of chromosomal breakage between these two genes. This study is the first to examine gene linkage in the macronucleus of several spirotrichs and may provide insight into the evolution of multi-gene macronuclear chromosomes and chromosomal fragmentation in spirotrichs.

Indexed as

ChromosomesGenes, ProtozoanGenetic LinkageAmino Acid SequenceAnimalsChromosome MappingCiliophoraCyclophilinsGene ExpressionMacronucleusMolecular Sequence DataProtozoan ProteinsRibosomal ProteinsSequence Homology, Amino AcidCyclophilinsProtozoan ProteinsRibosomal Proteins

Identifiers

PMID16520956
OpenAlexW2046173756

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.