Evidence map›Paper›PMID 16520917›Full record

ArticleDiabetologia2006

Alternative splicing of G6PC2, the gene coding for the islet-specific glucose-6-phosphatase catalytic subunit-related protein (IGRP), results in differential expression in human thymus and spleen compared with pancreas.

R S Dogra, P Vaidyanathan, K R Prabakar, K E Marshall, J C Hutton, A Pugliese

Open access · bronzeAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Diabetologia, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Epitope-based precision immunotherapy of Type 1 diabetes.Human vaccines & immunotherapeutics · 2023
    Article
  7. Review
  8. Review
  9. Review
  10. Islet-reactive CD8Science immunology · 2018
    Article
  11. T1D Autoantibodies: room for improvement?Current opinion in endocrinology, diabetes, and obesity · 2017
    Review
  12. Autoreactive T cells in type 1 diabetes.The Journal of clinical investigation · 2017
    Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Antigen targets of type 1 diabetes autoimmunity.Cold Spring Harbor perspectives in medicine · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

R S DograImmunogenetics Program, Diabetes Research Institute, University of Miami, FL, Miami, USA.
P Vaidyanathan
K R Prabakar
K E Marshall
J C Hutton
A Pugliese
University of Miami · USUniversity of Colorado Health · US

Funding

NICHD NIH HHS N01-HD-4-3368NICHD NIH HHS N01-HD-4-3383
6 · The paper itself

Abstract

aims/hypothesisAutoimmunity to insulin, glutamic acid decarboxylase and the tyrosine-phosphatase-like protein IA-2 is associated with type 1 diabetes. The production of self-molecules in thymus and secondary lymphoid tissues is critical for self-tolerance; reduced levels may impair tolerance and predispose to autoimmunity, as shown for insulin. Alternative splicing causes differential expression of IA-2 gene (PTPRN) transcripts and IA-2 protein in human thymus and spleen compared with pancreas. IA-2 sequences not present in lymphoid tissues become autoimmune targets in type 1 diabetes. The beta cell molecule islet-specific glucose-6-phosphatase catalytic subunit-related protein (IGRP) is an autoantigen in the non-obese diabetic (NOD) mouse, a model of type 1 diabetes. IGRP is a candidate autoantigen in the human disease, but robust assays for IGRP autoantibodies and/or autoreactive T cells are not available. Both full-length and IGRP splice variants encoded by the G6PC2 gene are expressed in the pancreas. In this study we tested the hypothesis that IGRP splice variants could be differentially expressed in thymus and spleen compared with the pancreas.

methodsWe evaluated the expression of G6PC2 transcripts in matched human thymus, spleen and pancreas specimens by RT-PCR.

resultsAlternative splicing results in differential expression of G6PC2 transcripts in thymus and spleen compared with pancreas. The full-length transcript is expressed in human pancreas but not in thymus or spleen. Five alternative spliced forms are always expressed in pancreas but those lacking exons 2, 3 and 4, alone or in combination, were rarely detected in thymus or spleen. CONCLUSIONS/

interpretationDifferential tissue expression might favour autoimmune responses to IGRP in humans; target epitopes may be encoded by exons 3 and 4, or at the junctions of the conserved exons in the spliced transcripts. This information may aid in designing synthetic peptides for the identification of IGRP-specific autoreactive T cells in patients with type 1 diabetes.

Indexed as

Alternative SplicingBase SequenceDiabetes Mellitus, Type 1DNA PrimersGene Expression Regulation, EnzymologicGlucose-6-PhosphataseHumansIslets of LangerhansOrgan SpecificityPancreasProtein SubunitsRNA, MessengerSpleenThymus GlandT-LymphocytesTranscription, GeneticDNA PrimersG6PC2 protein, humanGlucose-6-PhosphataseProtein SubunitsRNA, Messenger

Identifiers

PMID16520917
OpenAlexW1965327996

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.