Evidence map›Paper›PMID 16517939›Full record

ArticleNucleic acids research2006

An isoform of ZBP-89 predisposes the colon to colitis.

David J Law, Edwin M Labut, Rachael D Adams, Juanita L Merchant

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Murine colitis is mediated by vimentin.Scientific reports · 2013
    Article
  8. Article
  9. Butyrate increases IL-23 production by stimulated dendritic cells.American journal of physiology. Gastrointestinal and liver physiology · 2012
    Article
  10. Article
  11. Article
  12. Article
  13. The implications of alternative splicing in the ENCODE protein complement.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  14. Intestinal overexpression of ZNF148 suppresses ApcMin/+ neoplasia.Mammalian genome : official journal of the International Mammalian Genome Society · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

David J LawDepartment of Internal Medicine, University of Michigan, 1150 W. Medical Center Dr., MSRB I, Rm. 3510, Ann Arbor, MI 48109-0650, USA.
Edwin M Labut
Rachael D Adams
Juanita L Merchant
University of Michigan · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
Mechanisms of Gastrointestional Growth &TransformationR01DK055732 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MERCHANT, JUANITA L. · 2000 to 2014
$4.1M
ELECTRONEUTRAL H SECRETION IN DISTAL NEPHRONR01DK034533 · NIDDK · DARTMOUTH COLLEGE · PI STANTON, BRUCE A. · 1986 to 2006
$2.1M
ZBP-89 isoforms in gastrointestinal diseasesR21DK065004 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LAW, DAVID J · 2003 to 2004
$298k
NCI NIH HHS 5 P30 CA46592NCI NIH HHS P30 CA046592NIDDK NIH HHS DK-34533NIDDK NIH HHS R01 DK034533NIDDK NIH HHS R01 DK055732NIDDK NIH HHS R01-DK55732NIDDK NIH HHS R21 DK065004NIDDK NIH HHS R21 DK65004-01
6 · The paper itself

Abstract

Alternative splicing enables expression of functionally diverse protein isoforms. The structural and functional complexity of zinc-finger transcription factor ZBP-89 suggests that it may be among the class of alternatively spliced genes. We identified a human ZBP-89 splice isoform (ZBP-89(DeltaN)), which lacks amino terminal residues 1-127 of the full-length protein (ZBP-89(FL)). ZBP-89(DeltaN) mRNA was co-expressed with its ZBP-89(FL) cognate in gastrointestinal cell lines and tissues. Similarly, ZBP-89(DeltaN) protein was expressed. To define its function in vivo, we generated ZBP-89(DeltaN) knock-in mice by targeting exon 4 that encodes the amino terminus. Homozygous ZBP-89(DeltaN) mice, expressing only ZBP-89(DeltaN) protein, experienced growth delay, reduced viability and increased susceptibility to dextran sodium sulfate colitis. We conclude that ZBP-89(DeltaN) antagonizes ZBP-89(FL) function and that over-expression of the truncated isoform disrupts gastrointestinal homeostasis.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBase SequenceColitisColonDextran SulfateDNA-Binding ProteinsExonsFemaleGene TargetingGrowth DisordersHumansMaleMiceMolecular Sequence DataDextran SulfateDNA-Binding ProteinsProtein IsoformsTranscription FactorsZfp148 protein, mouseZNF148 protein, human

Identifiers

PMID16517939
PMCPMC1390687
OpenAlexW1586963379

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.