Evidence map›Paper›PMID 16517623›Full record

ArticleApplied and environmental microbiology2006

Freeze-thaw tolerance and clues to the winter survival of a soil community.

Virginia K Walker, Gerald R Palmer, Gerrit Voordouw

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Winter and early spring COScientific reports · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Accelerating Gut Microbiome Research with Robust Sample Collection.Research & reviews. Journal of microbiology and biotechnology · 2023
    Article
  6. NEcology and evolution · 2023
    Article
  7. Article
  8. Article
  9. Water is a preservative of microbes.Microbial biotechnology · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Diversity and Antimicrobial Activity towardsFoods (Basel, Switzerland) · 2021
    Article
  14. Article
  15. Article
  16. Soil microbial community responses to climate extremes: resistance, resilience and transitions to alternative states.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Virginia K WalkerDepartment of Biology, Queen's University, Kingston, Ontario, Canada K7L 3N6. walkervk@biology.queensu.ca
Gerald R Palmer
Gerrit Voordouw

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although efforts have been made to sample microorganisms from polar regions and to investigate a few of the properties that facilitate survival at freezing or subzero temperatures, soil communities that overwinter in areas exposed to alternate freezing and thawing caused by Foehn or Chinook winds have been largely overlooked. We designed and constructed a cryocycler to automatically subject soil cultures to alternating freeze-thaw cycles. After 48 freeze-thaw cycles, control Escherichia coli and Pseudomonas chlororaphis isolates were no longer viable. Mixed cultures derived from soil samples collected from a Chinook zone showed that the population complexity and viability were reduced after 48 cycles. However, when bacteria that were still viable after the freeze-thaw treatments were used to obtain selected cultures, these cultures proved to be >1,000-fold more freeze-thaw tolerant than the original consortium. Single-colony isolates obtained from survivors after an additional 48 freeze-thaw cycles were putatively identified by 16S RNA gene fragment sequencing. Five different genera were recognized, and one of the cultures, Chryseobacterium sp. strain C14, inhibited ice recrystallization, a property characteristic of antifreeze proteins that prevents the growth of large, potentially damaging ice crystals at temperatures close to the melting temperature. This strain was also notable since cell-free medium derived from cultures of it appeared to enhance the multiple freeze-thaw survival of another isolate, Enterococcus sp. strain C8. The results of this study and the development of a cryocycler should allow further investigations into the biochemical and soil community adaptations to the rigors of a Chinook environment.

Indexed as

BioreactorsFreezingSoil MicrobiologyWindAdaptation, PhysiologicalBacteriaCanadaColony Count, MicrobialEcosystemSeasons

Identifiers

PMID16517623
PMCPMC1393208

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.