Evidence map›Paper›PMID 16512901›Full record

ArticleRetrovirology2006

HTLV-I antisense transcripts initiating in the 3'LTR are alternatively spliced and polyadenylated.

Marie-Hélène Cavanagh, Sébastien Landry, Brigitte Audet, Charlotte Arpin-André, Patrick Hivin, Marie-Eve Paré, Julien Thête, Eric Wattel, Susan J Marriott, Jean-Michel Mesnard and 1 more

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 167 citations in OpenAlex.

  1. Review
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  7. TheViruses · 2024
    Article
  8. Article
  9. The Pleiotropic Effects of YBX1 on HTLV-1 Transcription.International journal of molecular sciences · 2023
    Article
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  20. Human retroviral antisense mRNAs are retained in the nuclei of infected cells for viral persistence.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article

55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Marie-Hélène CavanaghCentre de Recherche en Infectiologie, Centre Hospitalier Universitaire de Québec, Pavillon CHUL, Québec, G1V 4G2, Canada. marie-helene.cavanagh@crchul.ulaval.ca
Sébastien Landry
Brigitte Audet
Charlotte Arpin-André
Patrick Hivin
Marie-Eve Paré
Julien Thête
Eric Wattel
Susan J Marriott
Jean-Michel Mesnard
Benoit Barbeau
Centre National de la Recherche Scientifique · FRUniversité Laval · CACentre hospitalier universitaire de Québec · CABaylor College of Medicine · USCentre Léon Bérard · FRUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAntisense transcription in retroviruses has been suggested for both HIV-1 and HTLV-I, although the existence and coding potential of these transcripts remain controversial. Thorough characterization is required to demonstrate the existence of these transcripts and gain insight into their role in retrovirus biology.

resultsThis report provides the first complete characterization of an antisense retroviral transcript that encodes the previously described HTLV-I HBZ protein. In this study, we show that HBZ-encoding transcripts initiate in the 3' long terminal repeat (LTR) at several positions and consist of two alternatively spliced variants (SP1 and SP2). Expression of the most abundant HBZ spliced variant (SP1) could be detected in different HTLV-I-infected cell lines and importantly in cellular clones isolated from HTLV-I-infected patients. Polyadenylation of HBZ RNA occurred at a distance of 1450 nucleotides downstream of the HBZ stop codon in close proximity of a typical polyA signal. We have also determined that translation mostly initiates from the first exon located in the 3' LTR and that the HBZ isoform produced from the SP1 spliced variant demonstrated inhibition of Tax and c-Jun-dependent transcriptional activation.

conclusionThese results conclusively demonstrate the existence of antisense transcription in retroviruses, which likely plays a role in HTLV-I-associated pathogenesis through HBZ protein synthesis.

Indexed as

Alternative SplicingTranscription, GeneticBasic-Leucine Zipper Transcription FactorsDNA, AntisenseHuman T-lymphotropic virus 1Leucine ZippersPoly ARetroviridae ProteinsTerminal Repeat SequencesViral ProteinsBasic-Leucine Zipper Transcription FactorsDNA, AntisenseHBZ protein, human T-cell leukemia virus type IPoly ARetroviridae ProteinsViral Proteins

Identifiers

PMID16512901
PMCPMC1459196
OpenAlexW1555082803

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.