Evidence map›Paper›PMID 16511119›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2005

Crystallization of the C-terminal globular domain of avian reovirus fibre.

Mark J van Raaij, X Lois Hermo Parrado, Pablo Guardado Calvo, Gavin C Fox, Antonio L Llamas-Saiz, Celina Costas, José Martínez-Costas, Javier Benavente

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Crystallization of the C-terminal domain of the bacteriophage T7 fibre protein gp17.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
  2. Article
  3. Crystallization of the C-terminal head domain of the avian adenovirus CELO long fibre.Acta crystallographica. Section F, Structural biology and crystallization communications · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Mark J van RaaijDepartamento de Bioquímica y Biología Molecular, Facultad de Farmacia, Universidad de Santiago de Compostela, Campus Sur, E-15782 Santiago de Compostela, Spain. vanraaij@usc.es
X Lois Hermo Parrado
Pablo Guardado Calvo
Gavin C Fox
Antonio L Llamas-Saiz
Celina Costas
José Martínez-Costas
Javier Benavente
Universidade de Santiago de Compostela · ESEuropean Synchrotron Radiation Facility · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Avian reovirus fibre, a homotrimer of the sigmaC protein, is responsible for primary host-cell attachment. Using the protease trypsin, a C-terminal sigmaC fragment containing amino acids 156-326 has been generated which was subsequently purified and crystallized. Two different crystal forms were obtained, one grown in the absence of divalent cations and belonging to space group P6(3)22 (unit-cell parameters a = 75.6, c = 243.1 A) and one grown in the presence of either zinc or cadmium sulfate and belonging to space group P321 (unit-cell parameters a = 74.7, c = 74.5 A and a = 73.1, c = 69.9 A for the Zn(II)- and Cd(II)-grown crystals, respectively). The first crystal form diffracted synchrotron radiation to 3.0 A resolution and the second form to 2.2-2.3 A. Its closest related structure, the C-terminal fragment of mammalian reovirus fibre, has only 18% sequence identity and molecular-replacement attempts were unsuccessful. Therefore, a search is under way for suitable heavy-atom derivatives and attempts are being made to grow protein crystals containing selenomethionine instead of methionine.

Indexed as

Cadmium CompoundsCapsidCationsCrystallizationCrystallography, X-RayDNAEscherichia coliMethionineOrthoreovirus, AvianProtein BindingProtein ConformationProtein Structure, TertiarySelenomethionineSulfatesZinc SulfateCadmium Compoundscadmium sulfateCationsDNAMethionineSelenomethionineSulfatesZinc Sulfate

Identifiers

PMID16511119
PMCPMC1952445
OpenAlexW2080574158

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.