Evidence map›Paper›PMID 16511038›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2005

Structure of the pseudouridine synthase RsuA from Haemophilus influenzae.

Allan Matte, Gordon V Louie, J Sivaraman, Miroslaw Cygler, Stephen K Burley

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Insights into the biology of Escherichia coli through structural proteomics.Journal of structural and functional genomics · 2007
    Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Allan MatteBiotechnology Research Institute, Montreal, Quebec H4P 2R2, Canada.
Gordon V Louie
J Sivaraman
Miroslaw Cygler
Stephen K Burley

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structure of the pseudouridine synthase RsuA from Haemophilus influenza, which catalyzes the conversion of uridine to pseudouridine at a single position within 16S ribosomal RNA, has been determined at 1.59 A resolution and compared with that of Escherichia coli RsuA. The H. influenza enzyme contains an N-terminal S4-like alpha3beta4 domain followed by a catalytic domain, as observed in the structure of E. coli RsuA. Whereas the individual domains of E. coli and H. influenza RsuA are structurally similar, their relative spatial disposition differs greatly between the two structures. The former displays an extended open conformation with no direct contacts between the domains, while the latter is in a closed conformation with a large interface between the two domains. Domain closure presents several basic and polar residues into a putative RNA-binding cleft. It is proposed that this relative repositioning of the S4 and catalytic domains is used to modulate the shape and size of the rRNA-binding site in RsuA and in other pseudouridine synthases possessing S4 domains.

Indexed as

Binding SitesCatalytic DomainCrystallography, X-RayEscherichia coli ProteinsHaemophilus influenzaeHydro-LyasesIntramolecular TransferasesProtein Structure, TertiaryRNA-Binding Proteins16S RNA pseudouridine 516 synthase, E coliEscherichia coli ProteinsHydro-LyasesIntramolecular Transferasespseudouridylate synthetaseRNA-Binding Proteins

Identifiers

PMID16511038
PMCPMC1952432

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.