ArticleGenetics2006
Association mapping with single-feature polymorphisms.
Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
17 citing papers in PubMed.
- Combining bulk segregation analysis and microarrays for mapping of the pH trait in melon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls.PloS one · 2013Article
- An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays.Molecular ecology resources · 2012Article
- Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.).BMC genomics · 2012Article
- Unraveling the complex trait of harvest index with association mapping in rice (Oryza sativa L.).PloS one · 2012Article
- Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana.BMC genomics · 2010Article
- Article
- Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays.BMC genomics · 2009Article
- Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array.BMC genomics · 2008Article
- Article
- Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America · 2007Article
- Natural genetic variation in Arabidopsis: tools, traits and prospects for evolutionary ecology.Annals of botany · 2007Review
- Single feature polymorphism discovery in rice.PloS one · 2007Article
- Cladistic analysis of genotype data-application to GAW15 Problem 3.BMC proceedings · 2007Article
- Mapping translocation breakpoints using a wheat microarray.Nucleic acids research · 2007Article
- Article
- High-resolution mutation mapping reveals parallel experimental evolution in yeast.PLoS biology · 2006Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
Abstract
We develop methods for exploiting "single-feature polymorphism" data, generated by hybridizing genomic DNA to oligonucleotide expression arrays. Our methods enable the use of such data, which can be regarded as very high density, but imperfect, polymorphism data, for genomewide association or linkage disequilibrium mapping. We use a simulation-based power study to conclude that our methods should have good power for organisms like Arabidopsis thaliana, in which linkage disequilibrium is extensive, the reason being that the noisiness of single-feature polymorphism data is more than compensated for by their great number. Finally, we show how power depends on the accuracy with which single-feature polymorphisms are called.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.