Evidence map›Paper›PMID 16505997›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006

Dissociation (Ds) constructs, mapped Ds launch pads and a transiently-expressed transposase system suitable for localized insertional mutagenesis in rice.

Narayana M Upadhyaya, Qian-Hao Zhu, Xue-Rong Zhou, Andrew L Eamens, Mohammad S Hoque, Kerrie Ramm, Ramannee Shivakkumar, Kathryn F Smith, Shu-Ting Pan, Suzhi Li and 3 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Plants (Basel, Switzerland) · 2022
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  4. Review
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  6. Review
  7. Article
  8. Article
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  11. Article
  12. SNP discovery and genetic mapping of T-DNA insertional mutants in Fragaria vesca L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. A barley activation tagging system.Plant molecular biology · 2007
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Narayana M UpadhyayaCSIRO Plant Industry, GPO Box 1600, 2601, Canberra, ACT, Australia. Narayana.upadhyaya@csiro.au
Qian-Hao Zhu
Xue-Rong Zhou
Andrew L Eamens
Mohammad S Hoque
Kerrie Ramm
Ramannee Shivakkumar
Kathryn F Smith
Shu-Ting Pan
Suzhi Li
Kefan Peng
Song J Kim
Elizabeth S Dennis
Plant Industry · AUCommonwealth Scientific and Industrial Research Organisation · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have developed a transiently-expressed transposase (TET)-mediated Dissociation (Ds) insertional mutagenesis system for generating stable insertion lines in rice which will allow localized mutagenesis of a chromosomal region. In this system, a Ds containing T-DNA construct was used to produce Ds launch pad lines. Callus tissues, from single-copy Ds/T-DNA lines, were then transiently infected with Agrobacterium harbouring an immobile Ac (iAc) construct, also containing a green fluorescent protein gene (sgfpS65T) as the visual marker. We have regenerated stable Ds insertion lines at a frequency of 9-13% using selection for Ds excision and GFP counter selection against iAc and nearly half of them were unique insertion lines. Double transformants (iAc/Ds) were also obtained and their progeny yielded approximately 10% stable insertion lines following excision and visual marker screening with 50% redundancy. In general, more than 50% of the Ds reinsertions were within 1 cM of the launch pad. We have produced a large number of single-copy Ds/T-DNA launch pads distributed over the rice chromosomes and have further refined the Ds/T-DNA construct to enrich for "clean" single-copy T-DNA insertions. The availability of single copy "clean" Ds/T-DNA launch pads will facilitate chromosomal region-directed insertion mutagenesis. This system provides an opportunity for distribution of gene tagging tasks among collaborating laboratories on the basis of chromosomal locations.

Indexed as

Chromosome MappingChromosomes, PlantGenes, PlantMutagenesis, InsertionalDatabases, FactualDNA FootprintingDNA, PlantGene DosageGenes, ReporterGenome, PlantOryzaTransformation, GeneticTransgenesTransposasesDNA, PlantTransposases

Identifiers

PMID16505997
OpenAlexW2060531628

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.