Evidence map›Paper›PMID 16504235›Full record

ArticleVirology2006

The HIV-1 reverse transcriptase mutants G190S and G190A, which confer resistance to non-nucleoside reverse transcriptase inhibitors, demonstrate reductions in RNase H activity and DNA synthesis from tRNA(Lys, 3) that correlate with reductions in replication efficiency.

J Wang, C Dykes, R A Domaoal, C E Koval, R A Bambara, L M Demeter

Open access · greenAbstract read
In one paragraph

Article in Virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Reverse transcriptase and protease inhibitors mutational viral load in HIV infected pregnant women with transmitted drug resistance in Argentina.Revista espanola de quimioterapia : publicacion oficial de la Sociedad Espanola de Quimioterapia · 2021
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  17. HIV-1 diversity after a class switch failure.AIDS research and human retroviruses · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

J WangDepartment of Medicine, University of Rochester School of Medicine and Dentistry, NY 14642, USA.
C Dykes
R A Domaoal
C E Koval
R A Bambara
L M Demeter
University of Rochester · US

Funding

Impact of NNRTI Resistance on RNase H &HIV ReplicationR01AI041387 · NIAID · UNIVERSITY OF ROCHESTER · PI DYKES, CARRIE A · 1998 to 2011
$3.3M
NIAID NIH HHS R01 AI041387NIAID NIH HHS R01 AI-41387
6 · The paper itself

Abstract

We evaluated the replication efficiency of the HIV reverse transcriptase (RT) mutants K103N, G190A, and G190S, which confer resistance to the non-nucleoside RT inhibitor efavirenz, using growth competition assays in cell culture. In the absence of efavirenz, the fitness hierarchy was G190S < G190A < K103N < wild-type. The fitness reduction of G190S relative to K103N was less evident at high efavirenz concentrations, although K103N still replicated more efficiently. Efficiency of RNase H cleavage and RNA-dependent DNA synthesis from tRNA(Lys, 3) correlated with relative fitness, in biochemical studies of mutant RTs. Presteady state and steady state polymerization assays using DNA primers detected no abnormalities. This work is consistent with previous studies demonstrating that initiation of viral DNA synthesis is reduced in mutants with slowed RNase H cleavage, and suggests that both abnormalities contribute to the replication defect of these mutants. It also suggests that high concentrations of efavirenz are unlikely to favor the selection of G190S clinically.

Indexed as

Amino Acid SubstitutionBase SequenceCell LineDNA, ViralDrug Resistance, ViralGenes, ViralHIV-1HIV Reverse TranscriptaseHumansKineticsMutagenesis, Site-DirectedPoint MutationReverse Transcriptase InhibitorsRibonuclease HRNA, Transfer, LysVirus ReplicationDNA, ViralHIV Reverse TranscriptaseReverse Transcriptase InhibitorsRibonuclease HRNA, Transfer, Lys

Identifiers

PMID16504235
PMCPMC4484593
OpenAlexW2031741692

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.