ArticleBMC genomics2006
Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development.
Article in BMC genomics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 40 citations in OpenAlex.
- Transcriptional mechanisms underlying thiazolidine-4-carboxylic acid (T4C)-primed salt tolerance in Arabidopsis.Plant cell reports · 2025Article
- ACT2.6: Global Gene Coexpression Network inGenes · 2025Article
- ArabidopsisInternational journal of molecular sciences · 2021Article
- DNA Base Excision Repair in Plants: An Unfolding Story With Familiar and Novel Characters.Frontiers in plant science · 2019Review
- Analysis of pcC13-62 promoters predicts a link between cis-element variations and desiccation tolerance in Linderniaceae.Journal of experimental botany · 2018Article
- Transcript profiling for early stages during embryo development in Scots pine.BMC plant biology · 2016Article
- Gene networks and chromatin and transcriptional regulation of the phaseolin promoter in Arabidopsis.The Plant cell · 2013Article
- Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice.Functional & integrative genomics · 2012Article
- Functions of the poly(ADP-ribose) polymerase superfamily in plants.Cellular and molecular life sciences : CMLS · 2012Review
- Screening and identification of seed-specific genes using digital differential display tools combined with microarray data from common wheat.BMC genomics · 2011Article
- Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds.PloS one · 2011Article
- Transcription profiling of fertilization and early seed development events in a solanaceous species using a 7.7 K cDNA microarray from Solanum chacoense ovules.BMC plant biology · 2010Article
- The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development.Plant physiology · 2009Article
- Feasibility of the seed specific cruciferin C promoter in the self excision Cre/loxP strategy focused on generation of marker-free transgenic plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Gibberellic acid-mediated salt signaling in seed germination.Plant signaling & behavior · 2008Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPlant seeds are complex organs in which maternal tissues, embryo and endosperm, follow distinct but coordinated developmental programs. Some morphogenetic and metabolic processes are exclusively associated with seed development. The goal of this study was to explore the feasibility of incorporating the available online bioinformatics databases to discover Arabidopsis genes specifically expressed in certain organs, in our case immature seeds.
resultsA total of 11,032 EST sequences obtained from isolated immature seeds were used as the initial dataset (178 of them newly described here). A pilot study was performed using EST virtual subtraction followed by microarray data analysis, using the Genevestigator tool. These techniques led to the identification of 49 immature seed-specific genes. The findings were validated by RT-PCR analysis and in situ hybridization.
conclusionWe conclude that the combined in silico data analysis is an effective data mining strategy for the identification of tissue-specific gene expression.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.