ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006
Candidate genes for barley mutants involved in plant architecture: an in silico approach.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Article
- A guide to barley mutants.Hereditas · 2024Review
- A SQUAMOSA promoter binding protein-like transcription factor controls crop ideotype for high productivity in barley.Plant direct · 2022Article
- A mutant allele of thePlant direct · 2022Article
- Leaf angle: a target of genetic improvement in cereal crops tailored for high-density planting.Plant biotechnology journal · 2022Review
- A mechanistic view on lodging resistance in rye and wheat: a multiscale comparative study.Plant biotechnology journal · 2021Article
- Review
- Characterization of a dominant mutation for the liguleless trait: Aegilops tauschii liguleless (LgBMC plant biology · 2019Article
- Drawing a Line: Grasses and Boundaries.Plants (Basel, Switzerland) · 2018Review
- Article
- Isolation and characterization of a Psathyrostachys huashanica Keng 6Ns chromosome addition in common wheat.PloS one · 2013Article
- Transcriptome analysis of tomato flower pedicel tissues reveals abscission zone-specific modulation of key meristem activity genes.PloS one · 2013Article
- Comparative mapping of the oat Dw6/dw6 dwarfing locus using NILs and association with vacuolar proton ATPase subunit H.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- The domestication syndrome genes responsible for the major changes in plant form in the Triticeae crops.Plant & cell physiology · 2011Review
- A nonsense mutation in a putative sulphate transporter gene results in low phytic acid in barley.Functional & integrative genomics · 2011Article
- Genetic dissection of barley morphology and development.Plant physiology · 2011Article
- Cross talk between the KNOX and ethylene pathways is mediated by intron-binding transcription factors in barley.Plant physiology · 2010Article
- Microsatellite mapping of genes that determine supernumerary spikelets in wheat (T. aestivum) and rye (S. cereale).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- The genetics of barley low-tillering mutants: absent lower laterals (als).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Mutations in the rice liguleless gene result in a complete loss of the auricle, ligule, and laminar joint.Plant molecular biology · 2007Article
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7 authors.
Funding
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Abstract
To individuate candidate genes (CGs) for a set of barley developmental mutants, a synteny approach comparing the genomes of barley and rice has been introduced. Based on map positions of mutants, sequenced RFLP markers linked to the target loci were selected. The markers were mapped in silico by BLAST searches against the rice genome sequence and chromosomal regions syntenous to barley target intervals were identified. Rice syntenous regions were defined for 15 barley chromosomal intervals hosting 23 mutant loci affecting plant height (brh1; brh2; sld4), shoot and inflorescence branching (als; brc1; cul-2, -3, -5, -15, -16; dub1; mnd6; vrs1), development of leaves (lig) and leaf-like organs (cal-b19, -C15, -d4; lks5; suKD-25; suKE-74; suKF-76; trd; trp). Annotation of 110 Mb of rice genomic sequence made it possible to screen for putative CGs which are listed together with the reasons supporting mutant-gene associations. For two loci, CGs were identified with a clear probability to represent the locus considered. These include FRIZZY PANICLE, a candidate for the brc1 barley mutant, and the rice ortholog of maize Liguleless1 (Lg1), a candidate for the barley lig locus on chromosome 2H. For this locus, the validity of the approach was supported by the PCR-amplification of a genomic fragment of the orthologous barley sequence. SNP mapping located this fragment on chromosome 2H in the region hosting the lig genetic locus.
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