ArticleThe European physical journal. E, Soft matter2006
Chromatin fiber functional organization: some plausible models.
Article in The European physical journal. E, Soft matter, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Mathematical Modeling in the Study of Organisms and Their Parts.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Sequence-Dependent Orientational Coupling and Electrostatic Attraction in Cation-Mediated DNA-DNA Interactions.Journal of chemical theory and computation · 2023Article
- On biological individuation.Theory in biosciences = Theorie in den Biowissenschaften · 2022Article
- Historicity at the heart of biology.Theory in biosciences = Theorie in den Biowissenschaften · 2022Article
- From inert matter to the global society life as multi-level networks of processes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020Article
- Information, programme, signal: dead metaphors that negate the agency of organisms.Interdisciplinary science reviews : ISR · 2020Article
- Rigid Basepair Monte Carlo Simulations of One-Start and Two-Start Chromatin Fiber Unfolding by Force.Biophysical journal · 2018Article
- Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates.Biophysical journal · 2018Article
- Evidence of selection for an accessible nucleosomal array in human.BMC genomics · 2016Article
- On the role of inter-nucleosomal interactions and intrinsic nucleosome dynamics in chromatin function.Biochemistry and biophysics reports · 2016Review
- Critical dynamics in host-pathogen systems.Current topics in microbiology and immunology · 2013Review
- Is information a proper observable for biological organization?Progress in biophysics and molecular biology · 2012Review
- Transcription within condensed chromatin: Steric hindrance facilitates elongation.Biophysical journal · 2010Article
- A novel strategy of transcription regulation by intragenic nucleosome ordering.Genome research · 2010Article
- Probability landscapes for integrative genomics.Theoretical biology & medical modelling · 2008Article
- In situ methods to localize transgenes and transcripts in interphase nuclei: a tool for transgenic plant research.Plant methods · 2006Article
- Chromatin code, local non-equilibrium dynamics, and the emergence of transcription regulatory programs.The European physical journal. E, Soft matter · 2006Article
- Chromatin physics: Replacing multiple, representation-centered descriptions at discrete scales by a continuous, function-dependent self-scaled model.The European physical journal. E, Soft matter · 2006Review
- The chromatin regulatory code: beyond a histone code.The European physical journal. E, Soft matter · 2006Article
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2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We here present a modeling study of the chromatin fiber functional organization. Multi-scale modeling is required to unravel the complex interplay between the fiber and the DNA levels. It suggests plausible scenarios, including both physical and biological aspects, for fiber condensation, its targeted decompaction, and transcription regulation. We conclude that a major role of the chromatin fiber structure might be to endow DNA with allosteric potentialities and to control DNA transactions by an epigenetic tuning of its mechanical and topological constraints.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.