Evidence map›Paper›PMID 16501096›Full record

ArticleJournal of virology2006

Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site.

Scott R Eberhardy, Joao Goncalves, Sofia Coelho, David J Segal, Ben Berkhout, Carlos F Barbas

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
  3. Targeting HIV-1 proviral transcription.Current opinion in virology · 2019
    Review
  4. Article
  5. Genome-Editing Technologies: Principles and Applications.Cold Spring Harbor perspectives in biology · 2016
    Review
  6. Specific Reactivation of Latent HIV-1 by dCas9-SunTag-VP64-mediated Guide RNA Targeting the HIV-1 Promoter.Molecular therapy : the journal of the American Society of Gene Therapy · 2016
    Article
  7. CRISPR-mediated Activation of Latent HIV-1 Expression.Molecular therapy : the journal of the American Society of Gene Therapy · 2016
    Article
  8. Article
  9. Engineering T Cells to Functionally Cure HIV-1 Infection.Molecular therapy : the journal of the American Society of Gene Therapy · 2015
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Molecular Understanding of HIV-1 Latency.Advances in virology · 2012
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Scott R EberhardyThe Skaggs Institute for Chemical Biology, La Jolla, California 92037, USA.
Joao Goncalves
Sofia Coelho
David J Segal
Ben Berkhout
Carlos F Barbas
Scripps Research Institute · USUniversity of Lisbon · PTUniversity of Amsterdam · NL

Funding

Transcriptional Blockades of HIV-1R01GM065059 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI BARBAS, CARLOS F · 2003 to 2010
$2.8M
NIGMS NIH HHS GM065059NIGMS NIH HHS R01 GM065059
6 · The paper itself

Abstract

The human immunodeficiency virus type 1 (HIV-1) primer-binding site (PBS) is a highly conserved region in the HIV genome and represents an attractive target for the development of new anti-HIV therapies. In this study, we designed four artificial zinc finger transcription factors to bind at or adjacent to the PBS and repress transcription from the HIV-1 long terminal repeat (LTR). These proteins bound to the LTR in vivo, as demonstrated by the chromatin immunoprecipitation assay. In transient reporter assays, three of the four proteins repressed transcription of a reporter driven by the HIV-1 LTR. Only one of these proteins, however, designated KRAB-PBS2, was able to prevent virus production when transduced into primary lymphocytes. We observed >90% inhibition of viral replication over the course of several weeks compared to untransduced cells, and no significant cytotoxicity was observed. Long-term exposure of HIV-1 to KRAB-PBS2 induced mutations in the HIV-1 PBS that reduced the effectiveness of the repressor, but these mutations also resulted in decreased rates of viral replication. These results show that KRAB-PBS2 has the potential to be used in antiviral therapy for AIDS patients and might complement other gene-based strategies.

Indexed as

Amino Acid SequenceBase SequenceBinding SitesHIV-1HIV Long Terminal RepeatHumansMolecular Sequence DataRNA, Transfer, Amino AcylTranscription FactorsTranscription, GeneticVirus ReplicationZinc FingersRNA, Transfer, Amino AcylTranscription Factors

Identifiers

PMID16501096
PMCPMC1395442
OpenAlexW2133629119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.