Evidence map›Paper›PMID 16500891›Full record

ArticleNucleic acids research2006

The gene encoding the fragile X RNA-binding protein is controlled by nuclear respiratory factor 2 and the CREB family of transcription factors.

Karen T Smith, Robert D Nicholls, Daniel Reines

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  13. The cyclic AMP phenotype of fragile X and autism.Neuroscience and biobehavioral reviews · 2008
    Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Karen T SmithProgram in Genetics & Molecular Biology and Department of Biochemistry, Emory University School of Medicine, 1510 Clifton Road, Atlanta, GA 30322, USA.
Robert D Nicholls
Daniel Reines
Emory University · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
TRANSCRIPTION AND RNA BINDING IN FRAGILE X SYNDROMEP01HD035576 · NICHD · EMORY UNIVERSITY · PI WARREN, STEPHEN T. · 1997 to 2005
$5.0M
NICHD NIH HHS HD35576NICHD NIH HHS P01 HD035576NIGMS NIH HHS T32 GM008490
6 · The paper itself

Abstract

FMR1 encodes an RNA-binding protein whose absence results in fragile X mental retardation. In most patients, the FMR1 gene is cytosine-methylated and transcriptionally inactive. NRF-1 and Sp1 are known to bind and stimulate the active, but not the methylated/silenced, FMR1 promoter. Prior analysis has implicated a CRE site in regulation of FMR1 in neural cells but the role of this site is controversial. We now show that a phospho-CREB/ATF family member is bound to this site in vivo. We also find that the histone acetyltransferases CBP and p300 are associated with active FMR1 but are lost at the hypoacetylated fragile X allele. Surprisingly, FMR1 is not cAMP-inducible and resides in a newly recognized subclass of CREB-regulated genes. We have also elucidated a role for NRF-2 as a regulator of FMR1 in vivo through a previously unrecognized and highly conserved recognition site in FMR1. NRF-1 and NRF-2 act additively while NRF-2 synergizes with CREB/ATF at FMR1's promoter. These data add FMR1 to the collection of genes controlled by both NRF-1 and NRF-2 and disfavor its membership in the immediate early response group of genes.

Indexed as

Transcriptional ActivationActivating Transcription FactorsAnimalsBase SequenceBinding SitesCell LineConsensus SequenceConserved SequenceCyclic AMPCyclic AMP Response Element-Binding ProteinFragile X Messenger Ribonucleoprotein 1GA-Binding Protein Transcription FactorHumansMolecular Sequence Datap300-CBP Transcription FactorsPhosphorylationActivating Transcription FactorsCyclic AMPCyclic AMP Response Element-Binding ProteinFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1GA-Binding Protein Transcription Factorp300-CBP Transcription FactorsRepressor ProteinsUpstream Stimulatory Factors

Identifiers

PMID16500891
PMCPMC1383620
OpenAlexW2007042563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.