Evidence map›Paper›PMID 16498406›Full record

ArticleThe EMBO journal2006

A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory.

Akiko Murayama, Kazuhisa Sakura, Mina Nakama, Kayoko Yasuzawa-Tanaka, Etsuko Fujita, Yukiyo Tateishi, Yinan Wang, Toshikazu Ushijima, Tadashi Baba, Kazuko Shibuya and 3 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 176 citations in OpenAlex.

  1. Review
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  8. Mechanisms of chromatin-based epigenetic inheritance.Science China. Life sciences · 2022
    Review
  9. Article
  10. ABCB10 Loss Reduces CD4Journal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  11. Review
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  15. Review
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  18. Gene activation precedes DNA demethylation in response to infection in human dendritic cells.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Article
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Akiko MurayamaGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba Science City, Ibaraki, Japan.
Kazuhisa Sakura
Mina Nakama
Kayoko Yasuzawa-Tanaka
Etsuko Fujita
Yukiyo Tateishi
Yinan Wang
Toshikazu Ushijima
Tadashi Baba
Kazuko Shibuya
Akira Shibuya
Yoh-ichi Kawabe
Junn Yanagisawa
University of Tsukuba · JPGenesis Research Institute · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA demethylation plays a critical role in transcriptional regulation in differentiated somatic cells. However, there is no experimental evidence that CpG methylation in a small region of a genome restricts gene expression. Here, we show that the anti-CD3repsilon/CD28 antibody stimulation of human CD4+ T cells induces IL2 expression following epigenetic changes, including active demethylation of a specific CpG site, recruitment of Oct-1, and changes in histone modifications. When the stimulatory signal is withdrawn, Oct-1 remains on the enhancer region as a stable marker of the stimulation, causing the second induction to be faster and stronger. Our observations indicate that Oct-1-binding followed by CpG demethylation are key events in the epigenetic regulation of IL2 expression and may act as a memory of the regulatory event.

Indexed as

CpG IslandsDNA MethylationEpigenesis, GeneticPromoter Regions, GeneticBreast NeoplasmsCD28 AntigensCD4-Positive T-LymphocytesChromatin ImmunoprecipitationEnhancer Elements, GeneticGene Expression RegulationHistonesHumansInterleukin-2Jurkat CellsOctamer Transcription Factor-1Tumor Cells, CulturedCD28 AntigensHistonesInterleukin-2Octamer Transcription Factor-1

Identifiers

PMID16498406
PMCPMC1409718
OpenAlexW2115482696

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.