Evidence map›Paper›PMID 16498404›Full record

ArticleThe EMBO journal2006

Parp-1 protects homologous recombination from interference by Ku and Ligase IV in vertebrate cells.

Helfrid Hochegger, Donniphat Dejsuphong, Toru Fukushima, Ciaran Morrison, Eiichiro Sonoda, Valérie Schreiber, Guang Yu Zhao, Alihossein Saberi, Mitsuko Masutani, Noritaka Adachi and 3 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 138 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
138citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

138 citing papers in PubMed, 1 synthesis or guideline pooled it, 268 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review

78 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 4 countries.

Helfrid HocheggerDepartment of Radiation Genetics, Faculty of Medicine, Kyoto University, Kyoto, Japan.
Donniphat Dejsuphong
Toru Fukushima
Ciaran Morrison
Eiichiro Sonoda
Valérie Schreiber
Guang Yu Zhao
Alihossein Saberi
Mitsuko Masutani
Noritaka Adachi
Hideki Koyama
Gilbert de Murcia
Shunichi Takeda
Kyoto University · JPCentre National de la Recherche Scientifique · FRÉcole Supérieure de Biotechnologie de Strasbourg · FRKihara Institute for Biological Research · JPNational Cancer Research Institute · GBOllscoil na Gaillimhe – University of Galway · IEYokohama City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parp-1 and Parp-2 are activated by DNA breaks and have been implicated in the repair of DNA single-strand breaks (SSB). Their involvement in double-strand break (DSB) repair mediated by homologous recombination (HR) or nonhomologous end joining (NHEJ) remains unclear. We addressed this question using chicken DT40 cells, which have the advantage of carrying only a PARP-1 gene but not a PARP-2 gene. We found that PARP-1(-/-) DT40 mutants show reduced levels of HR and are sensitive to various DSB-inducing genotoxic agents. Surprisingly, this phenotype was strictly dependent on the presence of Ku, a DSB-binding factor that mediates NHEJ. PARP-1/KU70 double mutants were proficient in the execution of HR and displayed elevated resistance to DSB-inducing drugs. Moreover, we found deletion of Ligase IV, another NHEJ gene, suppressed the camptothecin of PARP-1(-/-) cells. Our results suggest a new critical function for Parp in minimizing the suppressive effects of Ku and the NHEJ pathway on HR.

Indexed as

Recombination, GeneticAnimalsAntigens, NuclearB-LymphocytesCamptothecinCell LineChickensDNADNA-Binding ProteinsDNA DamageDNA Ligase ATPDNA LigasesHomozygoteKu AutoantigenMutationPhenotypeAntigens, NuclearCamptothecinDNADNA-Binding ProteinsDNA Ligase ATPDNA LigasesKu AutoantigenPoly(ADP-ribose) Polymerases

Identifiers

PMID16498404
PMCPMC1422167
OpenAlexW2046136351

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.