Evidence map›Paper›PMID 16490214›Full record

ArticleJournal of molecular biology2006

The human LINE-1 retrotransposon creates DNA double-strand breaks.

Stephen L Gasior, Timothy P Wakeman, Bo Xu, Prescott L Deininger

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 321 papers.

0numbers the graph read from it
0cells of the map it votes in
321citing papers in PubMed
26.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

321 citing papers in PubMed, 513 citations in OpenAlex.

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  18. Disease insights from brain somatic mosaicism.Experimental & molecular medicine · 2026
    Review
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  20. Article

261 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Stephen L GasiorTulane Cancer Center and Department of Epidemiology, Tulane University Health Sciences Center, 1430 Tulane Ave., New Orleans, LA 70112, USA.
Timothy P Wakeman
Bo Xu
Prescott L Deininger
Louisiana State University Health Sciences Center New Orleans · USTulane University · US

Funding

UNCOVERING THE MECHANISMS OF OSTEOSARCOMA METASTASIS SUPPRESSION BY MTBPP20RR020152 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI YOU, ZONGBING · 2004 to 2011
$17.0M
Sine RetrotranspositionR01GM045668 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI DEININGER, PRESCOTT L. · 1993 to 2014
$4.2M
ATM and ATR in Chromium-Induced S-Phase ArrestR03ES013301 · NIEHS · SOUTHERN RESEARCH INSTITUTE · PI XU, BO · 2004 to 2005
$143k
NCRR NIH HHS P20 RR020152NCRR NIH HHS P20RR020152-01NIEHS NIH HHS R03 ES013301NIEHS NIH HHS R03ES013301-01NIGMS NIH HHS R01 GM045668NIGMS NIH HHS R01GM45668
6 · The paper itself

Abstract

Long interspersed element-1 (L1) is an autonomous retroelement that is active in the human genome. The proposed mechanism of insertion for L1 suggests that cleavage of both strands of genomic DNA is required. We demonstrate that L1 expression leads to a high level of double-strand break (DSB) formation in DNA using immunolocalization of gamma-H2AX foci and the COMET assay. Similar to its role in mediating DSB repair in response to radiation, ATM is required for L1-induced gamma-H2AX foci and for L1 retrotransposition. This is the first characterization of a DNA repair response from expression of a non-long terminal repeat (non-LTR) retrotransposon in mammalian cells as well as the first demonstration that a host DNA repair gene is required for successful integration. Notably, the number of L1-induced DSBs is greater than the predicted numbers of successful insertions, suggesting a significant degree of inefficiency during the integration process. This result suggests that the endonuclease activity of endogenously expressed L1 elements could contribute to DSB formation in germ-line and somatic tissues.

Indexed as

DNA DamageDNA RepairLong Interspersed Nucleotide ElementsAnimalsAtaxia Telangiectasia Mutated ProteinsCell CycleCell Cycle ProteinsComet AssayDNADNA-Binding ProteinsDNA FragmentationHeLa CellsHistonesHumansProtein Serine-Threonine KinasesTumor Suppressor ProteinsAtaxia Telangiectasia Mutated ProteinsATM protein, humanCell Cycle ProteinsDNADNA-Binding ProteinsH2AX protein, humanHistonesProtein Serine-Threonine KinasesTumor Suppressor Proteins

Identifiers

PMID16490214
PMCPMC4136747
OpenAlexW1987332588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.