Evidence map›Paper›PMID 16489429›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006

Positional relationships between photoperiod response QTL and photoreceptor and vernalization genes in barley.

P Szucs, I Karsai, J von Zitzewitz, K Mészáros, L L D Cooper, Y Q Gu, T H H Chen, P M Hayes, J S Skinner

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 95 citations in OpenAlex.

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  15. QTL mapping of grain yield and phosphorus efficiency in barley in a Mediterranean-like environment.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  16. Genetic analysis of developmental and adaptive traits in three doubled haploid populations of barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  17. Article
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  19. Phytochrome C plays a major role in the acceleration of wheat flowering under long-day photoperiod.Proceedings of the National Academy of Sciences of the United States of America · 2014
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

P SzucsDepartment of Crop and Soil Science, Oregon State University, 253 Crop Science Building, Corvallis, OR 97331, USA.
I Karsai
J von Zitzewitz
K Mészáros
L L D Cooper
Y Q Gu
T H H Chen
P M Hayes
J S Skinner
Oregon State University · USAgrárközgazdasági Intézet · HUHungarian Academy of Sciences · HUWestern Regional Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Winterhardiness has three primary components: photoperiod (day length) sensitivity, vernalization response, and low temperature tolerance. Photoperiod and vernalization regulate the vegetative to reproductive phase transition, and photoperiod regulates expression of key vernalization genes. Using two barley mapping populations, we mapped six individual photoperiod response QTL and determined their positional relationship to the phytochrome and cryptochrome photoreceptor gene families and the vernalization regulatory genes HvBM5A, ZCCT-H, and HvVRT-2. Of the six photoreceptors mapped in the current study (HvPhyA and HvPhyB to 4HS, HvPhyC to 5HL, HvCry1a and HvCry2 to 6HS, and HvCry1b to 2HL), only HvPhyC coincided with a photoperiod response QTL. We recently mapped the candidate genes for the 5HL VRN-H1 (HvBM5A) and 4HL VRN-H2 (ZCCT-H) loci, and in this study, we mapped HvVRT-2, the barley TaVRT-2 ortholog (a wheat flowering repressor regulated by vernalization and photoperiod) to 7HS. Each of these three vernalization genes is located in chromosome regions determining small photoperiod response QTL effects. HvBM5A and HvPhyC are closely linked on 5HL and therefore are currently both positional candidates for the same photoperiod effect. The coincidence of photoperiod-responsive vernalization genes with photoperiod QTL suggests vernalization genes should also be considered candidates for photoperiod effects.

Indexed as

Gene Expression Regulation, PlantGenes, PlantPhotosynthetic Reaction Center Complex ProteinsQuantitative Trait LociAllelesChromosome MappingChromosomes, PlantGenome, PlantHordeumPhotoperiodPhotosynthetic Reaction Center Complex Proteins

Identifiers

PMID16489429
OpenAlexW2002585787

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.