Evidence map›Paper›PMID 16487083›Full record

ArticleGenomics, proteomics & bioinformatics2005

A comprehensive software suite for the analysis of cDNAs.

Kazuharu Arakawa, Haruo Suzuki, Kosuke Fujishima, Kenji Fujimoto, Sho Ueda, Motomu Matsui, Masaru Tomita

Abstract read
In one paragraph

Article in Genomics, proteomics & bioinformatics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kazuharu ArakawaInstitute for Advanced Biosciences, Keio University, Fujisawa 252-8520, Japan. mt@sfc.keio.ac.jp
Haruo Suzuki
Kosuke Fujishima
Kenji Fujimoto
Sho Ueda
Motomu Matsui
Masaru Tomita

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.

Indexed as

SoftwareAlternative SplicingAmino AcidsAnimalsCluster AnalysisCodon, InitiatorCodon, TerminatorComputational BiologyDNA, ComplementaryInternetMolecular Sequence DataProtein ConformationAmino AcidsCodon, InitiatorCodon, TerminatorDNA, Complementary

Identifiers

PMID16487083
PMCPMC5172547

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.