Evidence map›Paper›PMID 16484188›Full record

ArticleJournal of bacteriology2006

Species- and strain-specific control of a complex, flexible regulon by Bordetella BvgAS.

C A Cummings, H J Bootsma, D A Relman, J F Miller

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 142 citations in OpenAlex.

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  12. Review
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  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

C A CummingsVA Palo Alto Health Care System, 154T, Bldg. 101, C4-151, 3801 Miranda Ave., Palo Alto, CA 94304, USA. cummings@cmgm.stanford.edu
H J Bootsma
D A Relman
J F Miller
University of California, Los Angeles · USVA Palo Alto Health Care System · US

Funding

Type III Secretion in BordetellaR01AI061598 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MILLER, JEFFERY F. · 2004 to 2008
$1.8M
BORDETELLA VIRULENCE REGULON IN VITRO AND IN VIVOR01AI038417 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MILLER, JEFFERY F. · 1995 to 2005
$1.6M
Analytical Tools for Comparative Microbial GenomicsR33AI057188 · NIAID · STANFORD UNIVERSITY · PI RELMAN, DAVID ARNOLD · 2005 to 2006
$823k
Analytical Tools for Comparative Microbial GenomicsR21AI057188 · NIAID · STANFORD UNIVERSITY · PI RELMAN, DAVID ARNOLD · 2003 to 2004
$287k
Bordetella Response to Host Cues and Cell SignalsR03AI054970 · NIAID · STANFORD UNIVERSITY · PI RELMAN, DAVID ARNOLD · 2003 to 2004
$130k
NIAID NIH HHS AI057188NIAID NIH HHS AI061598NIAID NIH HHS AI38417NIAID NIH HHS AI54970NIAID NIH HHS R01 AI038417NIAID NIH HHS R01 AI061598NIAID NIH HHS R03 AI054970NIAID NIH HHS R21 AI057188NIAID NIH HHS R33 AI057188
6 · The paper itself

Abstract

The Bordetella master virulence regulatory system, BvgAS, controls a spectrum of gene expression states, including the virulent Bvg(+) phase, the avirulent Bvg(-) phase, and at least one Bvg-intermediate (Bvg(i)) phase. We set out to define the species- and strain-specific features of this regulon based on global gene expression profiling. Rather than functioning as a switch, Bvg controls a remarkable continuum of gene expression states, with hundreds of genes maximally expressed in intermediate phases between the Bvg(+) and Bvg(-) poles. Comparative analysis of Bvg regulation in B. pertussis and B. bronchiseptica revealed a relatively conserved Bvg(+) phase transcriptional program and identified previously uncharacterized candidate virulence factors. In contrast, control of Bvg(-)- and Bvg(i)-phase genes diverged substantially between species; regulation of metabolic, transporter, and motility loci indicated an increased capacity in B. bronchiseptica, compared to B. pertussis, for ex vivo adaptation. Strain comparisons also demonstrated variation in gene expression patterns within species. Among the genes with the greatest variability in patterns of expression, predicted promoter sequences were nearly identical. Our data suggest that the complement of transcriptional regulators is largely responsible for transcriptional diversity. In support of this hypothesis, many putative transcriptional regulators that were Bvg regulated in B. bronchiseptica were deleted, inactivated, or unregulated by BvgAS in B. pertussis. We propose the concept of a "flexible regulon." This flexible regulon may prove to be important for pathogen evolution and the diversification of host range specificity.

Indexed as

Gene Expression Regulation, BacterialRegulonBacterial ProteinsBordetella bronchisepticaSignal TransductionSpecies SpecificityTranscription FactorsBacterial ProteinsBvgA protein, BacteriabvgS protein, Bordetella pertussisTranscription Factors

Identifiers

PMID16484188
PMCPMC1426559
OpenAlexW2145661401

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.