Evidence map›Paper›PMID 16484181›Full record

ArticleJournal of bacteriology2006

Integration into the phage attachment site, attB, impairs multicellular differentiation in Stigmatella aurantiaca.

Susanne Müller, Hui Shen, Diana Hofmann, Hans Ulrich Schairer, John R Kirby

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Susanne MüllerGeorgia Institute of Technology, School of Biology, 310 Ferst Drive, Atlanta, Georgia 30332-0230, USA. john.kirby@biology.gatech.edu
Hui Shen
Diana Hofmann
Hans Ulrich Schairer
John R Kirby
Heidelberg University · DEGeorgia Institute of Technology · USInstitute for Biological Sciences · CA

Funding

Chemosensory Regulation of Bacterial Gene ExpressionR01AI059682 · NIAID · UNIVERSITY OF IOWA · PI KIRBY, JOHN R · 2005 to 2009
$1.4M
NIAID NIH HHS AI059682NIAID NIH HHS R01 AI059682
6 · The paper itself

Abstract

Stigmatella aurantiaca displays a complex developmental life cycle in response to starvation conditions that results in the formation of tree-like fruiting bodies capable of producing spores. The phage Mx8, first isolated from the close relative Myxococcus xanthus, is unable to infect S. aurantiaca cells and integrate into the genome. However, plasmids containing Mx8 fragments encoding the integrase and attP are able to integrate at the attB locus in the S. aurantiaca genome by site-specific recombination. After recombination between attP and attB, the S. aurantiaca cells were incapable of building normal fruiting bodies but formed clumps and fungus-like structures characteristic of intermediate stages of development displayed by the wild type. We identified two tRNA genes, trnD and trnV, encoding tRNA(Asp) and tRNA(Val), respectively, composing an operon at the attB locus of S. aurantiaca. Integration of attP-containing plasmids resulted in the incorporation of the t(Mx8) terminator sequence, in addition to a short sequence of Mx8 DNA downstream of trnD. The integrant was unable to process the trnD transcript at the normal 3' processing site and displayed a lower level of expression of the trnVD operon. In addition, several developmentally regulated proteins were no longer produced in mutants following insertion at the attB locus. We hypothesize that the integration of the t(Mx8) terminator sequence results in reduced levels of mature tRNA(Asp) and tRNA(Val) and that altered protein production during development is thereby responsible for the observed phenotype. The trnVD locus thus defines a new developmental checkpoint for Stigmatella aurantiaca.

Indexed as

Gene Expression Regulation, BacterialAttachment Sites, MicrobiologicalBacterial ProteinsBacteriophagesBase SequenceGenes, BacterialGenetic Complementation TestIntegrasesMolecular Sequence DataMutagenesis, Site-DirectedOperonPlasmidsRNA, Transfer, AspRNA, Transfer, ValSequence AlignmentSpores, BacterialBacterial ProteinsIntegrasesRNA, Transfer, AspRNA, Transfer, ValViral Proteins

Identifiers

PMID16484181
PMCPMC1426541
OpenAlexW1973239458

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.