Evidence map›Paper›PMID 16483255›Full record

ArticleThe Biochemical journal2006

High-affinity AKAP7delta-protein kinase A interaction yields novel protein kinase A-anchoring disruptor peptides.

Christian Hundsrucker, Gerd Krause, Michael Beyermann, Anke Prinz, Bastian Zimmermann, Oliver Diekmann, Dorothea Lorenz, Eduard Stefan, Pavel Nedvetsky, Margitta Dathe and 8 more

Abstract read
In one paragraph

Article in The Biochemical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. The optimal docking strength for reversibly tethered kinases.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  2. Review
  3. Disruptors of AKAP-Dependent Protein-Protein Interactions.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  4. Biochemical Analysis of AKAP-Anchored PKA Signaling Complexes.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. A-kinase-anchoring proteins coordinate inflammatory responses to cigarette smoke in airway smooth muscle.American journal of physiology. Lung cellular and molecular physiology · 2015
    Article
  13. Selective disruption of the AKAP signaling complexes.Methods in molecular biology (Clifton, N.J.) · 2015
    Article
  14. Article
  15. Article
  16. Article
  17. Cardiomyocytes from AKAP7 knockout mice respond normally to adrenergic stimulation.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  18. Article
  19. A-kinase anchoring proteins as potential drug targets.British journal of pharmacology · 2012
    Review
  20. A-kinase anchoring proteins: scaffolding proteins in the heart.American journal of physiology. Heart and circulatory physiology · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Christian HundsruckerLeibniz-Institut für Molekulare Pharmakologie, Campus Berlin-Buch, Robert-Rössle-Str. 10, 13125 Berlin, Germany.
Gerd Krause
Michael Beyermann
Anke Prinz
Bastian Zimmermann
Oliver Diekmann
Dorothea Lorenz
Eduard Stefan
Pavel Nedvetsky
Margitta Dathe
Frank Christian
Theresa McSorley
Eberhard Krause
George McConnachie
Friedrich W Herberg
John D Scott
Walter Rosenthal
Enno Klussmann

Funding

TRANSCRIPTIONAL REGULATION BY THE CAM CASCADEP01DK044239 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOODMAN, RICHARD H. · 1992 to 2006
$9.6M
NIDDK NIH HHS P01 DK044239
6 · The paper itself

Abstract

PKA (protein kinase A) is tethered to subcellular compartments by direct interaction of its regulatory subunits (RI or RII) with AKAPs (A kinase-anchoring proteins). AKAPs preferentially bind RII subunits via their RII-binding domains. RII-binding domains form structurally conserved amphipathic helices with unrelated sequences. Their binding affinities for RII subunits differ greatly within the AKAP family. Amongst the AKAPs that bind RIIalpha subunits with high affinity is AKAP7delta [AKAP18delta; K(d) (equilibrium dissociation constant) value of 31 nM]. An N-terminally truncated AKAP7delta mutant binds RIIalpha subunits with higher affinity than the full-length protein presumably due to loss of an inhibitory region [Henn, Edemir, Stefan, Wiesner, Lorenz, Theilig, Schmidtt, Vossebein, Tamma, Beyermann et al. (2004) J. Biol. Chem. 279, 26654-26665]. In the present study, we demonstrate that peptides (25 amino acid residues) derived from the RII-binding domain of AKAP7delta bind RIIalpha subunits with higher affinity (K(d)=0.4+/-0.3 nM) than either full-length or N-terminally truncated AKAP7delta, or peptides derived from other RII binding domains. The AKAP7delta-derived peptides and stearate-coupled membrane-permeable mutants effectively disrupt AKAP-RII subunit interactions in vitro and in cell-based assays. Thus they are valuable novel tools for studying anchored PKA signalling. Molecular modelling indicated that the high affinity binding of the amphipathic helix, which forms the RII-binding domain of AKAP7delta, with RII subunits involves both the hydrophobic and the hydrophilic faces of the helix. Alanine scanning (25 amino acid peptides, SPOT technology, combined with RII overlay assays) of the RII binding domain revealed that hydrophobic amino acid residues form the backbone of the interaction and that hydrogen bond- and salt-bridge-forming amino acid residues increase the affinity of the interaction.

Indexed as

Protein BindingAdaptor Proteins, Signal TransducingA Kinase Anchor ProteinsAmino AcidsAmino Acid SequenceAnimalsBinding SitesCells, CulturedCyclic AMP-Dependent Protein KinasesElectrophysiologyHydrogen BondingHydrophobic and Hydrophilic InteractionsMembrane ProteinsModels, MolecularMolecular Sequence DataPeptidesAdaptor Proteins, Signal TransducingAKAP7 protein, humanA Kinase Anchor ProteinsAmino AcidsCyclic AMP-Dependent Protein KinasesMembrane ProteinsPeptidesProtein Subunits

Identifiers

PMID16483255
PMCPMC1462715

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.