Evidence map›Paper›PMID 16482219›Full record

ArticleThe EMBO journal2006

The mechanism of repression of the myeloid-specific c-fms gene by Pax5 during B lineage restriction.

Hiromi Tagoh, Richard Ingram, Nicola Wilson, Giorgia Salvagiotto, Alan J Warren, Deborah Clarke, Meinrad Busslinger, Constanze Bonifer

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Molecular Regulation of Differentiation in Early B-Lymphocyte Development.International journal of molecular sciences · 2018
    Review
  10. Article
  11. CSF-1 receptor signaling in myeloid cells.Cold Spring Harbor perspectives in biology · 2014
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Hiromi TagohDivision of Experimental Haematology, LIMM, University of Leeds, St James's University Hospital, Leeds, UK.
Richard Ingram
Nicola Wilson
Giorgia Salvagiotto
Alan J Warren
Deborah Clarke
Meinrad Busslinger
Constanze Bonifer
St James's University Hospital · GBVienna Biocenter · ATMRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council MC_U105161083
6 · The paper itself

Abstract

The transcription factor Pax5 (BSAP) is required for the expression of a B-cell-specific genetic program and for B-cell differentiation, and also to suppress genes of alternative lineages. The molecular mechanism by which repression of myeloid genes occurs during early B-lineage restriction is unknown and in this study we addressed this question. One of the genes repressed by Pax5 in B cells is the colony-stimulating factor receptor 1 gene (csf1r or c-fms). We examined the changes in chromatin caused by Pax5 activity, and we show that Pax5 is directly recruited to c-fms resulting in the rapid loss of RNA polymerase II binding, followed by loss of transcription factor binding and DNaseI hypersensitivity at all cis-regulatory elements. We also show that Pax5 targets the basal transcription machinery of c-fms by interacting with a binding site within the major transcription start sites. Our results support a model by which Pax5 does not lead to major alterations in chromatin modification, but inhibits transcription by interfering with the action of myeloid transcription factors.

Indexed as

Cell LineageGene Expression RegulationAnimalsB-LymphocytesChromatinChromatin ImmunoprecipitationDeoxyribonuclease IDNA FootprintingMiceMice, KnockoutMyeloid CellsPAX5 Transcription FactorPromoter Regions, GeneticProtein BindingProto-Oncogene ProteinsProto-Oncogene Protein Spi-1ChromatinDeoxyribonuclease IPax5 protein, mousePAX5 Transcription FactorProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Receptor, Macrophage Colony-Stimulating FactorRepressor ProteinsRNA Polymerase IITrans-ActivatorsTranscription Factors

Identifiers

PMID16482219
PMCPMC1409732
OpenAlexW2069029811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.