Evidence map›Paper›PMID 16478999›Full record

ArticleMolecular and cellular biology2006

Nuclear assembly of UGA decoding complexes on selenoprotein mRNAs: a mechanism for eluding nonsense-mediated decay?

Lucia A de Jesus, Peter R Hoffmann, Tanya Michaud, Erin P Forry, Andrea Small-Howard, Robert J Stillwell, Nadya Morozova, John W Harney, Marla J Berry

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 51 citations in OpenAlex.

  1. SEPHS1: Its evolution, function and roles in development and diseases.Archives of biochemistry and biophysics · 2022
    Article
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  3. Review
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  5. Article
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  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. The human selenoproteome: recent insights into functions and regulation.Cellular and molecular life sciences : CMLS · 2009
    Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lucia A de JesusDepartment of Cell and Molecular Biology, University of Hawaii at Manoa, Honolulu, HI 96822, USA.
Peter R Hoffmann
Tanya Michaud
Erin P Forry
Andrea Small-Howard
Robert J Stillwell
Nadya Morozova
John W Harney
Marla J Berry
University of Hawaiʻi at Mānoa · USBrigham and Women's Hospital · US

Funding

USING EEG COMPLEXITY AND HIGH PERFORMANCE COMPUTING TO PROFILE SLEEPP20RR016467 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI HOLMES, ERIC · 2001 to 2011
$24.5M
MECHANISM OF SELENOPROTEIN SYNTHESIS IN EUKARYOTESR01DK047320 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI BERRY, MARLA J · 1994 to 2020
$5.8M
ALTERNATIVE MECHANISMS OF UGA CODON RECOGNITIONR01DK052963 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI BERRY, MARLA J · 1997 to 2005
$1.4M
MECHANISM OF SELENOPROTEIN SYNTHESISR56DK047320 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI BERRY, MARLA J · 2009 to 2009
$368k
NCRR NIH HHS P20 RR016467NCRR NIH HHS RR16467NIDDK NIH HHS DK47320NIDDK NIH HHS DK52963NIDDK NIH HHS R01 DK047320NIDDK NIH HHS R01 DK052963NIDDK NIH HHS R56 DK047320
6 · The paper itself

Abstract

Recoding of UGA from a stop codon to selenocysteine poses a dilemma for the protein translation machinery. In eukaryotes, two factors that are crucial to this recoding process are the mRNA binding protein of the Sec insertion sequence, SBP2, and the specialized elongation factor, EFsec. We sought to determine the subcellular localization of these selenoprotein synthesis factors in mammalian cells and thus gain insight into how selenoprotein mRNAs might circumvent nonsense-mediated decay. Intriguingly, both EFsec and SBP2 localization differed depending on the cell line but significant colocalization of the two proteins was observed in cells where SBP2 levels were detectable. We identify functional nuclear localization and export signals in both proteins, demonstrate that SBP2 undergoes nucleocytoplasmic shuttling, and provide evidence that SBP2 levels and localization may influence EFsec localization. Our results suggest a mechanism for the nuclear assembly of the selenocysteine incorporation machinery that could allow selenoprotein mRNAs to circumvent nonsense-mediated decay, thus providing new insights into the mechanism of selenoprotein translation.

Indexed as

Active Transport, Cell NucleusAmino Acid SequenceAnimalsCell LineCell NucleusCytoplasmGenetic CodeHumansMiceMolecular Sequence DataNuclear Export SignalsNuclear Localization SignalsPeptide Elongation FactorsProtein Structure, TertiaryRatsRNA-Binding ProteinsEFsec protein, mouseNuclear Export SignalsNuclear Localization SignalsPeptide Elongation FactorsRNA-Binding ProteinsRNA, MessengerSECISBP2 protein, humanSelenocysteineSelenoproteins

Identifiers

PMID16478999
PMCPMC1430236
OpenAlexW1991394753

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.