Evidence map›Paper›PMID 16478980›Full record

ArticleMolecular and cellular biology2006

Unique role for the UbL-UbA protein Ddi1 in turnover of SCFUfo1 complexes.

Yelena Ivantsiv, Ludmila Kaplun, Regina Tzirkin-Goldin, Nitzan Shabek, Dina Raveh

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 59 citations in OpenAlex.

  1. Review
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  9. Transcriptional regulation of the 26S proteasome by Nrf1.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yelena IvantsivDepartment of Life Sciences, Ben Gurion University of the Negev, Beersheba 84105, Israel.
Ludmila Kaplun
Regina Tzirkin-Goldin
Nitzan Shabek
Dina Raveh
Ben-Gurion University of the Negev · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SCF complexes are E3 ubiquitin-protein ligases that mediate degradation of regulatory and signaling proteins and control G1/S cell cycle progression by degradation of G1 cyclins and the cyclin-dependent kinase inhibitor, Sic1. Interchangeable F-box proteins bind the core SCF components; each recruits a specific subset of substrates for ubiquitylation. The F-box proteins themselves are rapidly turned over by autoubiquitylation, allowing rapid recycling of SCF complexes. Here we report a role for the UbL-UbA protein Ddi1 in the turnover of the F-box protein, Ufo1. Ufo1 is unique among F-box proteins in having a domain comprising multiple ubiquitin-interacting motifs (UIMs) that mediate its turnover. Deleting the UIMs leads to stabilization of Ufo1 and to cell cycle arrest at G1/S of cells with long buds resembling skp1 mutants. Cells accumulate substrates of other F-box proteins, indicating that the SCF pathway of substrate ubiquitylation is inhibited. Ufo1 interacts with Ddi1 via its UIMs, and Deltaddi1 cells arrest when full-length UFO1 is overexpressed. These results imply a role for the UIMs in turnover of SCF(Ufo1) complexes that is dependent on Ddi1, a novel activity for an UbL-UbA protein.

Indexed as

Amino Acid MotifsBase SequenceCell CycleCyclinsDeoxyribonucleases, Type II Site-SpecificF-Box MotifsF-Box ProteinsGene DeletionMolecular Sequence DataMultiprotein ComplexesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSKP Cullin F-Box Protein LigasesTwo-Hybrid System TechniquesUbiquitinUbiquitin-Protein Ligase ComplexesCLN2 protein, S cerevisiaeCyclinsDDI1 protein, S cerevisiaeDeoxyribonucleases, Type II Site-SpecificF-Box ProteinsMultiprotein ComplexesSaccharomyces cerevisiae ProteinsSCEI protein, S cerevisiaeSKP Cullin F-Box Protein LigasesUbiquitinUbiquitin-Protein Ligase ComplexesUFO1 protein, S cerevisiae

Identifiers

PMID16478980
PMCPMC1430233
OpenAlexW2145281326

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.