ArticleGenome research2006
A global assembly of cotton ESTs.
Article in Genome research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
72 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Pooled it
- Genetic basis and role of exotic accessions in cultivated cotton fiber quality improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Transcriptional Landscape of Cotton Fiber Development and Its Alliance With Fiber-Associated Traits.Frontiers in plant science · 2022Article
- Systematic analysis of the pectin methylesterase gene family inFrontiers in plant science · 2022Article
- Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing.Genome biology and evolution · 2019Article
- Insights Into Upland Cotton (Genomics insights · 2017Article
- Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae).Genome biology and evolution · 2016Article
- Homoeologs: What Are They and How Do We Infer Them?Trends in plant science · 2016Review
- SNP Marker Discovery in Pima Cotton (Genomics insights · 2016Article
- Article
- Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima.G3 (Bethesda, Md.) · 2015Article
- Analyzing serial cDNA libraries revealed reactive oxygen species and gibberellins signaling pathways in the salt response of Upland cotton (Gossypium hirsutum L.).Plant cell reports · 2015Article
- Toward Coalescing Gene Expression and Function with QTLs of Water-Deficit Stress in Cotton.International journal of plant genomics · 2015Article
- Homeologous genes involved in mannitol synthesis reveal unequal contributions in response to abiotic stress in Coffea arabica.Molecular genetics and genomics : MGG · 2014Article
- Polyploidy and the petal transcriptome of Gossypium.BMC plant biology · 2014Article
- CottonGen: a genomics, genetics and breeding database for cotton research.Nucleic acids research · 2014Article
- Molecular markers and cotton genetic improvement: current status and future prospects.TheScientificWorldJournal · 2014Review
- Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome.PLoS genetics · 2014Article
- Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.G3 (Bethesda, Md.) · 2013Article
- A genetic and metabolic analysis revealed that cotton fiber cell development was retarded by flavonoid naringenin.Plant physiology · 2013Article
12 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
36 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions, including drought stress and pathogen challenges. These libraries were derived from allopolyploid cotton (Gossypium hirsutum; A(T) and D(T) genomes) as well as its two diploid progenitors, Gossypium arboreum (A genome) and Gossypium raimondii (D genome). ESTs were assembled using the Program for Assembling and Viewing ESTs (PAVE), resulting in 22,030 contigs and 29,077 singletons (51,107 unigenes). Further comparisons among the singletons and contigs led to recognition of 33,665 exemplar sequences that represent a nonredundant set of putative Gossypium genes containing partial or full-length coding regions and usually one or two UTRs. The assembly, along with their UniProt BLASTX hits, GO annotation, and Pfam analysis results, are freely accessible as a public resource for cotton genomics. Because ESTs from diploid and allotetraploid Gossypium were combined in a single assembly, we were in many cases able to bioinformatically distinguish duplicated genes in allotetraploid cotton and assign them to either the A or D genome. The assembly and associated information provide a framework for future investigation of cotton functional and evolutionary genomics.
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Registered trials
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