Evidence map›Paper›PMID 16478534›Full record

ArticleBMC developmental biology2006

Zebrafish transgenic Enhancer TRAP line database (ZETRAP).

Benjamin G H Choo, Igor Kondrichin, Sergey Parinov, Alexander Emelyanov, William Go, Wei-chang Toh, Vladimir Korzh

Open access · hybridAbstract read
In one paragraph

Article in BMC developmental biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. wnt10a is required for zebrafish median fin fold maintenance and adult unpaired fin metamorphosis.Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Article
  3. Fish-Ing for Enhancers in the Heart.International journal of molecular sciences · 2021
    Review
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  7. Review
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  18. In vitro oocyte culture-based manipulation of zebrafish maternal genes.Developmental dynamics : an official publication of the American Association of Anatomists · 2013
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Benjamin G H ChooInstitute of Molecular and Cell Biology, 61 Biopolis Dr, Proteos, 138673, Singapore. benjaminchoogh@yahoo.com
Igor Kondrichin
Sergey Parinov
Alexander Emelyanov
William Go
Wei-chang Toh
Vladimir Korzh
Institute of Molecular and Cell Biology · SGNanyang Polytechnic · SGNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe zebrafish, Danio rerio, is used as a model organism to study vertebrate genetics and development. An effective enhancer trap (ET) in zebrafish using the Tol2 transposon has been demonstrated. This approach could be used to study embryogenesis of a vertebrate species in real time and with high resolution. DESCRIPTION: The information gathered during the course of systematic investigation of many ET transgenic lines have been collected and compiled in the form of an online database--the Zebrafish Enhancer TRAP lines database (ZETRAP).

conclusionZETRAP is a web-based system that provides data and information to the scientific community about the developmental, genetic and genomic aspects of transgenic zebrafish lines obtained using Tol2 transposon-mediated transgenesis. The current version (version 1.0) contains description of 27 ET lines that express EGFP in various organs and tissues, for example, heart, brain, notochord, gut, etc. It also includes information on insertion sites of the Tol2 transposon in these lines.

Indexed as

Databases, GeneticAnimalsAnimals, Genetically ModifiedDNA Transposable ElementsGene ExpressionGreen Fluorescent ProteinsInternetZebrafishDNA Transposable Elementsenhanced green fluorescent proteinGreen Fluorescent Proteins

Identifiers

PMID16478534
PMCPMC1386650
OpenAlexW1807110013

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.