Evidence map›Paper›PMID 16477041›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

The U(L)41 protein of herpes simplex virus 1 degrades RNA by endonucleolytic cleavage in absence of other cellular or viral proteins.

Brunella Taddeo, Weiran Zhang, Bernard Roizman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 86 citations in OpenAlex.

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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Brunella TaddeoThe Marjorie Kovler Viral Oncology Laboratories, University of Chicago, Chicago, IL 60637, USA.
Weiran Zhang
Bernard Roizman
University of Chicago · US

Funding

Virus Production CoreP01CA071933 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WEICHSELBAUM, RALPH R · 1997 to 2013
$14.5M
VIRUS AND CELL GENE EXPRESSION IN KAPOSI SARCOMA ASSOCIATED HERPESVIRUS TUMORSP01CA087661 · NCI · PRINCETON UNIVERSITY · PI SHENK, THOMAS E · 2000 to 2004
$10.9M
FUNCTIONS FOR HERPES SIMPLEX VIRUS ICP22 AND US1.5R01CA083939 · NCI · UNIVERSITY OF CHICAGO · PI ROIZMAN, BERNARD · 2000 to 2009
$4.8M
Dissection Of The Functions Of Herpes Simplex Virus ICPOR37CA078766 · NCI · UNIVERSITY OF CHICAGO · PI ROIZMAN, BERNARD · 2003 to 2012
$4.4M
The functions of the US3 protein kinase of herpes simplex virusR01CA088860 · NCI · UNIVERSITY OF CHICAGO · PI ROIZMAN, BERNARD · 2001 to 2011
$3.4M
DISSECTION OF THE FUNCTIONS OF HERPES SIMPLEX VIRUS ICPOR01CA078766 · NCI · UNIVERSITY OF CHICAGO · PI ROIZMAN, BERNARD · 1998 to 2002
$1.1M
NCI NIH HHS CA71933NCI NIH HHS CA78766NCI NIH HHS CA87661NCI NIH HHS CA88860NCI NIH HHS CA93939NCI NIH HHS P01 CA071933NCI NIH HHS P01 CA087661NCI NIH HHS R01 CA078766NCI NIH HHS R01 CA083939NCI NIH HHS R01 CA088860NCI NIH HHS R37 CA078766
6 · The paper itself

Abstract

The herpes simplex virus 1 ORF U(L)41 encodes a protein (virion host shutoff or vhs) associated with selective degradation of mRNA early in infection. Some mRNAs, exemplified by GAPDH or beta-actin mRNAs, are degraded rapidly. Others, for example IEX-1 mRNA, are degraded in two stages: whereas the 3' domain disappears rapidly, a large 5' domain fragment of the mRNA lingers for several hours. Still a third, exemplified by tristetraprolin mRNA, is not degraded, allowing its protein product to accumulate in infected cells. Here we report the following: (i) a GST-vhs protein produced in Escherichia coli, solubilized and purified to homogeneity acts as bona fide endoribonuclease when tested on in vitro transcribed IEX-1 probes. A GST-vhs protein in which three key vhs amino acids were replaced with alanines, solubilized and purified by the same protocol, had no enzymatic activity. (ii) The number of fragments generated by cleavage of a truncated IEX-1 RNA by vhs appears to be small; the cleavage sites are centered at or near the AU-rich elements located at the 3' untranslated region of the mRNA. A truncated RNA containing only the IEX-1 coding domain was cleaved numerous times. (iii) In cells infected at high multiplicity and exposed to a large number of particles per cell, the vhs protein accumulated within 3 h after infection, in small uniform cytoplasmic granules raising the possibility that vhs colocalizes with tristerapolin, a protein induced after infection, in structures involved in degradation of RNA.

Indexed as

3' Untranslated RegionsApoptosis Regulatory ProteinsCells, CulturedCytoplasmEndoribonucleasesGlutathione TransferaseHerpes SimplexHerpesvirus 1, HumanHumansMembrane ProteinsRecombinant Fusion ProteinsRibonucleasesRNA, MessengerTristetraprolinViral Proteins3' Untranslated RegionsApoptosis Regulatory ProteinsEndoribonucleasesGlutathione TransferaseIER3 protein, humanMembrane ProteinsRecombinant Fusion ProteinsRibonucleasesRNA, MessengerTristetraprolinViral Proteinsvirion host shutoff protein, Simplexvirus

Identifiers

PMID16477041
PMCPMC1413801
OpenAlexW2012837174

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.