ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006
Mining and characterizing microsatellites from citrus ESTs.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.
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75 citing papers in PubMed.
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- Complete Chloroplast Genome ofGenes · 2024Article
- Phylogeny and diversification of genus Sanicula L. (Apiaceae): novel insights from plastid phylogenomic analyses.BMC plant biology · 2024Article
- Six Express Sequence Tag-Simple Sequence Repeat Primers Reveal Genetic Diversity in the Cultivars of ThreeCurrent issues in molecular biology · 2023Article
- Comprehensive genome-wide identification and transferability of chromosome-specific highly variable microsatellite markers from citrus species.Scientific reports · 2023Article
- Comparative and phylogenetic analysis of the complete chloroplast genomes of six Polygonatum species (Asparagaceae).Scientific reports · 2023Article
- Assembly and analysis of the complete mitochondrial genome of the Chinese wild dwarf almond (Frontiers in genetics · 2023Article
- Occurrence of simple sequence repeats in cDNA sequences of safflower (Frontiers in plant science · 2022Article
- Development of a new set of genic SSR markers in the genus3 Biotech · 2021Article
- High-Density Genetic Map Construction and Identification of QTLs Controlling Leaf Abscission Trait inInternational journal of molecular sciences · 2021Article
- Generation of Chloroplast Molecular Markers to DifferentiatePlants (Basel, Switzerland) · 2021Article
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- Chloroplast genomes elucidate diversity, phylogeny, and taxonomy of Pulsatilla (Ranunculaceae).Scientific reports · 2020Article
- Comparing chloroplast genomes of traditional Chinese herbsChinese herbal medicines · 2020Article
- Transcriptome Sequencing and Development of Novel Genic SSR Markers FromFrontiers in genetics · 2020Article
- Comparative analyses of chloroplast genomes from 22 Lythraceae species: inferences for phylogenetic relationships and genome evolution within Myrtales.BMC plant biology · 2019Article
- Sequencing and Structural Analysis of the Complete Chloroplast Genome of the Medicinal PlantPlants (Basel, Switzerland) · 2019Article
15 more citing papers are in PubMed but not listed here.
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5 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Freely available computer programs were arranged in a pipeline to extract microsatellites from public citrus EST sequences, retrieved from the NCBI. In total, 3,278 bi- to hexa-type SSR-containing sequences were identified from 56,199 citrus ESTs. On an average, one SSR was found per 5.2 kb of EST sequence, with the tri-nucleotide motifs as the most abundant. Primer sequences flanking SSR motifs were successfully identified from 2,295 citrus ESTs. Among those, a subset (100 pairs) were synthesized and tested to determine polymorphism and heterozygosity between/within two genera, sweet orange (C. sinensis) and Poncirus (P. trifoliata), which are the parents of the citrus core mapping population selected for an international citrus genomics effort. Eighty-seven pairs of primers gave PCR amplification to the anticipated SSRs, of which 52 and 35 appear to be homozygous and heterozygous, respectively, in sweet orange, and 67 and 20, respectively, in Poncirus. By pairing the loci between the two intergeneric species, it was found that 40 are heterozygous in at least one species with two alleles (9), three alleles (28), or four alleles (3), and the remaining 47 are homozygous in both species with either one allele (31) or two alleles (16). These EST-derived SSRs can be a resource used for understanding of the citrus SSR distribution and frequency, and development of citrus EST-SSR genetic and physical maps. These SSR primer sequences are available upon request.
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