Evidence map›Paper›PMID 16474158›Full record

ArticleJournal of virology2006

Nature of nonfunctional envelope proteins on the surface of human immunodeficiency virus type 1.

Penny L Moore, Emma T Crooks, Lauren Porter, Ping Zhu, Charmagne S Cayanan, Henry Grise, Paul Corcoran, Michael B Zwick, Michael Franti, Lynn Morris and 3 more

Abstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 236 papers.

0numbers the graph read from it
0cells of the map it votes in
236citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

236 citing papers in PubMed.

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176 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Penny L MooreTorrey Pines Institute for Molecular Studies, San Diego, CA 92121, USA.
Emma T Crooks
Lauren Porter
Ping Zhu
Charmagne S Cayanan
Henry Grise
Paul Corcoran
Michael B Zwick
Michael Franti
Lynn Morris
Kenneth H Roux
Dennis R Burton
James M Binley

Funding

TUBERCULOSIS SUPPLEMENTD43TW000231 · FIC · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI ABDOOL KARIM, QUARRAISHA · 1993 to 2014
$13.1M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR01AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 1992 to 2013
$5.9M
HIV and SIV Envelope GlycoproteinsR01AI055461 · NIAID · FLORIDA STATE UNIVERSITY · PI ROUX, KENNETH H · 2003 to 2011
$2.8M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR37AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BURTON, DENNIS R. · 1995 to 2004
$2.4M
Rescue of broadly neutralizing mAbs using native trimerR01AI100790 · NIAID · TORREY PINES INST FOR MOLECULAR STUDIES · PI BINLEY, JAMES M · 2012 to 2016
$2.3M
SELECTING ENV TRIMERS IN HIV-VLP VACCINE PRESENTATIONSR01AI058763 · NIAID · TORREY PINES INST FOR MOLECULAR STUDIES · PI BINLEY, JAMES M · 2004 to 2007
$1.9M
Selecting Env Trimers in HIV-VLP Vaccine PresentationsR56AI058763 · NIAID · TORREY PINES INST FOR MOLECULAR STUDIES · PI BINLEY, JAMES M · 2008 to 2009
$591k
STABILIZING ENV IN VIRUS-LIKE PARTICLE IMMUNOGENSR21AI049566 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI BINLEY, JAMES M · 2000 to 2001
$520k
FIC NIH HHS D43 TW000231FIC NIH HHS D43 TW00231NIAID NIH HHS AI055461NIAID NIH HHS AI058763NIAID NIH HHS AI33292NIAID NIH HHS AI49566NIAID NIH HHS R01 AI033292NIAID NIH HHS R01 AI055461NIAID NIH HHS R01 AI058763NIAID NIH HHS R01 AI100790NIAID NIH HHS R37 AI033292NIAID NIH HHS R56 AI058763
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) neutralizing antibodies are thought be distinguished from nonneutralizing antibodies by their ability to recognize functional gp120/gp41 envelope glycoprotein (Env) trimers. The antibody responses induced by natural HIV-1 infection or by vaccine candidates tested to date consist largely of nonneutralizing antibodies. One might have expected a more vigorous neutralizing response, particularly against virus particles that bear functional trimers. The recent surprising observation that nonneutralizing antibodies can specifically capture HIV-1 may provide a clue relating to this paradox. Specifically, it was suggested that forms of Env, to which nonneutralizing antibodies can bind, exist on virus surfaces. Here, we present evidence that HIV-1 particles bear nonfunctional gp120/gp41 monomers and gp120-depleted gp41 stumps. Using a native electrophoresis band shift assay, we show that antibody-trimer binding predicts neutralization and that the nonfunctional forms of Env may account for virus capture by nonneutralizing antibodies. We hypothesize that these nonfunctional forms of Env on particle surfaces serve to divert the antibody response, helping the virus to evade neutralization.

Indexed as

AnimalsAntibodies, MonoclonalBlotting, WesternElectrophoresis, Polyacrylamide GelElectrophoretic Mobility Shift AssayEnzyme-Linked Immunosorbent AssayHIV-1HIV AntibodiesHIV Envelope Protein gp120HIV Envelope Protein gp160HIV Envelope Protein gp41HumansMiceMicroscopy, ImmunoelectronNeutralization TestsVirionAntibodies, MonoclonalHIV AntibodiesHIV Envelope Protein gp120HIV Envelope Protein gp160HIV Envelope Protein gp41

Identifiers

PMID16474158
PMCPMC1395414

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.