Evidence map›Paper›PMID 16469346›Full record

ArticleVirology2006

The effect of genome length on ejection forces in bacteriophage lambda.

Paul Grayson, Alex Evilevitch, Mandar M Inamdar, Prashant K Purohit, William M Gelbart, Charles M Knobler, Rob Phillips

Abstract read
In one paragraph

Article in Virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Review
  2. Article
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  12. Evolution of the Free Energy Landscapes ofThe journal of physical chemistry. B · 2021
    Article
  13. Article
  14. Article
  15. Frontiers in microbiology · 2020
    Article
  16. Article
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  18. Article
  19. Structure of a headful DNA-packaging bacterial virus at 2.9 Å resolution by electron cryo-microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Paul GraysonDepartment of Physics, California Institute of Technology, Pasadena, 91125, USA. grayson@caltech.edu
Alex Evilevitch
Mandar M Inamdar
Prashant K Purohit
William M Gelbart
Charles M Knobler
Rob Phillips

Funding

NIH Director's Pioneer Award (RMI)DP1OD000217 · OD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI PHILLIPS, ROB · 2004 to 2008
$4.0M
NIH HHS DP1 OD000217
6 · The paper itself

Abstract

A variety of viruses tightly pack their genetic material into protein capsids that are barely large enough to enclose the genome. In particular, in bacteriophages, forces as high as 60 pN are encountered during packaging and ejection, produced by DNA bending elasticity and self-interactions. The high forces are believed to be important for the ejection process, though the extent of their involvement is not yet clear. As a result, there is a need for quantitative models and experiments that reveal the nature of the forces relevant to DNA ejection. Here, we report measurements of the ejection forces for two different mutants of bacteriophage lambda, lambdab221cI26 and lambdacI60, which differ in genome length by approximately 30%. As expected for a force-driven ejection mechanism, the osmotic pressure at which DNA release is completely inhibited varies with the genome length: we find inhibition pressures of 15 atm and 25 atm, for the short and long genomes, respectively, values that are in agreement with our theoretical calculations.

Indexed as

Genome, ViralBacteriophage lambdaBiophysical PhenomenaBiophysicsDNA, ViralModels, BiologicalMutationNucleic Acid ConformationOsmotic PressurePressureVirus AssemblyDNA, Viral

Identifiers

PMID16469346
PMCPMC3178461

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.