Evidence map›Paper›PMID 16468040›Full record

ArticleCurrent genetics2006

Agrobacterium T-DNA-mediated integration and gene replacement in the brown rot pathogen Monilinia fructicola.

Miin-Huey Lee, Richard M Bostock

Abstract read
PubMed Publisher
In one paragraph

Article in Current genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Generation ofMicroorganisms · 2019
    Article
  5. Labeling ofGenes · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Tissue specific response of Agrobacterium tumefaciens attachment to Sorghum bicolor (L) Moench.Physiology and molecular biology of plants : an international journal of functional plant biology · 2008
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Miin-Huey LeeDepartment of Plant Pathology, University of California, One Shields Ave, Davis, CA 95616, USA.
Richard M Bostock
Department of Plant Biology · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A transformation system utilizing Agrobacterium tumefaciens was developed for targeted gene disruption in Monilinia fructicola, a fungal pathogen that causes brown rot disease of stone fruits. Transformation with a vector containing the neomycin phosphotransferase II (nptII) cassette flanked with 4 kb cutinase gene (Mfcut1) flanking sequences resulted in an average of 13 transformants per 10(5) spores. When assayed by PCR and DNA blot analyses, more than 50% of the transformants recovered had integrated in the targeted Mfcut1 locus. Both target-gene-specific and non-specific integrations carried direct (head-to-tail) repeat T-DNA integrations. Sequence analysis of these T-DNA integrations revealed that 26 bp of the T-DNA right border were missing at the junctions between direct repeats in all cases. The recombination event during non-specific T-DNA integration in this fungus was unlike that reported in Agrobacterium-mediated transformation in plants.

Indexed as

Transformation, GeneticAgrobacterium tumefaciensAscomycotaBase SequenceCarboxylic Ester HydrolasesCell NucleusDNA, BacterialDrug Resistance, FungalGenes, FungalGenetic VectorsGenome, FungalKanamycin KinaseMolecular Sequence DataMutagenesis, InsertionalNeomycinPlant DiseasesCarboxylic Ester HydrolasescutinaseDNA, BacterialKanamycin KinaseNeomycinT-DNA

Identifiers

PMID16468040
OpenAlexW2034899892

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.