Evidence map›Paper›PMID 16463103›Full record

ArticlePlant molecular biology2006

The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.

Chen Yanhui, Yang Xiaoyuan, He Kun, Liu Meihua, Li Jigang, Gao Zhaofeng, Lin Zhiqiang, Zhang Yunfei, Wang Xiaoxiao, Qiu Xiaoming and 8 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 452 papers.

0numbers the graph read from it
0cells of the map it votes in
452citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

452 citing papers in PubMed, 1,016 citations in OpenAlex.

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392 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 2 countries.

Chen YanhuiPeking-Yale Joint Center for Plant Molecular Genetics and AgroBiotechnology, National Key Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, 100871, Beijing, People's Republic of China.
Yang Xiaoyuan
He Kun
Liu Meihua
Li Jigang
Gao Zhaofeng
Lin Zhiqiang
Zhang Yunfei
Wang Xiaoxiao
Qiu Xiaoming
Shen Yunping
Zhang Li
Deng Xiaohui
Luo Jingchu
Deng Xing-Wang
Chen Zhangliang
Gu Hongya
Qu Li-Jia
Peking University · CNYale University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MYB proteins are a superfamily of transcription factors that play regulatory roles in developmental processes and defense responses in plants. We identified 198 genes in the MYB superfamily from an analysis of the complete Arabidopsis genome sequence, among them, 126 are R2R3-MYB, 5 are R1R2R3-MYB, 64 are MYB-related, and 3 atypical MYB genes. Here we report the expression profiles of 163 genes in the Arabidopsis MYB superfamily whose full-length open reading frames have been isolated. This analysis indicated that the expression for most of the Arabidopsis MYB genes were responsive to one or multiple types of hormone and stress treatments. A phylogenetic comparison of the members of this superfamily in Arabidopsis and rice suggested that the Arabidopsis MYB superfamily underwent a rapid expansion after its divergence from monocots but before its divergence from other dicots. It is likely that the MYB-related family was more ancient than the R2R3-MYB gene family, or had evolved more rapidly. Therefore, the MYB gene superfamily represents an excellent system for investigating the evolution of large and complex gene families in higher plants. Our comprehensive analysis of this largest transcription factor superfamily of Arabidopsis and rice may help elucidate the possible biological roles of the MYB genes in various aspects of flowering plants.

Indexed as

Gene Expression Regulation, PlantPhylogenyAmino Acid SequenceArabidopsisEvolution, MolecularGene Expression ProfilingGenes, mybGenes, PlantMultigene FamilyMutationOryzaSequence Homology, Amino Acid

Identifiers

PMID16463103
OpenAlexW2029690199

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.