Evidence map›Paper›PMID 16461775›Full record

ArticleGut2006

Disease severity and genetic pathways in attenuated familial adenomatous polyposis vary greatly but depend on the site of the germline mutation.

O M Sieber, S Segditsas, A L Knudsen, J Zhang, J Luz, A J Rowan, S L Spain, C Thirlwell, K M Howarth, E E M Jaeger and 13 more

Open access · greenAbstract read
In one paragraph

Article in Gut, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 104 citations in OpenAlex.

  1. Review
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  6. Gastrointestinal Cancer Precursor Conditions and Their Detection.Hematology/oncology clinics of North America · 2024
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  13. A rare missense variant inHereditary cancer in clinical practice · 2020
    Article
  14. Review
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  17. Wnt Signaling and Colorectal Cancer.Current colorectal cancer reports · 2017
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 9 institutions in 5 countries.

O M SieberMolecular and Population Genetics Laboratory, Cancer Research UK, London Research Institute, London, UK.
S Segditsas
A L Knudsen
J Zhang
J Luz
A J Rowan
S L Spain
C Thirlwell
K M Howarth
E E M Jaeger
J Robinson
E Volikos
A Silver
G Kelly
S Aretz
I Frayling
P Hutter
M Dunlop
T Guenther
K Neale
R Phillips
K Heinimann
I P M Tomlinson
Cancer Research UK · GBUniversity of Basel · CHSt Mark's Hospital · GBCRUK Lung Cancer Centre of Excellence · GBHôpital du Valais · CHHvidovre Hospital · DKMRC Institute of Genetics and Molecular Medicine · GBUniversity Hospital of Wales · GBUniversity of Bonn · DE

Funding

Medical Research Council MC_U127527198
6 · The paper itself

Abstract

backgroundAttenuated familial adenomatous polyposis (AFAP) is associated with germline mutations in the 5', 3', and exon 9 of the adenomatous polyposis coli (APC) gene. These mutations probably encode a limited amount of functional APC protein. METHODS AND

resultsWe found that colonic polyp number varied greatly among AFAP patients but members of the same family tended to have more similar disease severity. 5' Mutants generally had more polyps than other patients. We analysed somatic APC mutations/loss of heterozygosity (LOH) in 235 tumours from 35 patients (16 families) with a variety of AFAP associated germline mutations. In common with two previous studies of individual kindreds, we found biallelic changes ("third hits") in some polyps. We found that the "third hit" probably initiated tumorigenesis. Somatic mutation spectra were similar in 5' and 3' mutant patients, often resembling classical FAP. In exon 9 mutants, in contrast, "third hits" were more common. Most "third hits" left three 20 amino acid repeats (20AARs) on the germline mutant APC allele, with LOH (or proximal somatic mutation) of the wild-type allele; but some polyps had loss of the germline mutant with mutation leaving one 20AAR on the wild-type allele.

conclusionsWe propose that mutations, such as nt4661insA, that leave three 20AARs are preferentially selected in cis with some AFAP mutations because the residual protein function is near optimal for tumorigenesis. Not all AFAP polyps appear to need "three hits" however. AFAP is phenotypically and genetically heterogeneous. In addition to effects of different germline mutations, modifier genes may be acting on the AFAP phenotype, perhaps influencing the quantity of functional protein produced by the germline mutant allele.

Indexed as

Adenomatous Polyposis ColiAdenomatous Polyposis Coli ProteinAdultAgedDNA Mutational AnalysisExonsFemaleGerm-Line MutationHumansLoss of HeterozygosityMaleMiddle AgedPhenotypePolymorphism, Single NucleotideAdenomatous Polyposis Coli Protein

Identifiers

PMID16461775
PMCPMC1856441
OpenAlexW2171857926

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.