ArticleBMC microbiology2006
Generation, annotation, and analysis of an extensive Aspergillus niger EST collection.
Article in BMC microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed, 48 citations in OpenAlex.
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- Four Aromatic Intradiol Ring Cleavage Dioxygenases from Aspergillus niger.Applied and environmental microbiology · 2019Article
- Diverse data supports the transition of filamentous fungal model organisms into the post-genomics era.Mycology · 2017Article
- Expression of fungal acetyl xylan esterase in Arabidopsis thaliana improves saccharification of stem lignocellulose.Plant biotechnology journal · 2016Article
- Functional and structural diversity in GH62 α-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum.Microbial biotechnology · 2015Article
- The production and characterization of a new active lipase from Acremonium alcalophilum using a plant bioreactor.Biotechnology for biofuels · 2013Article
- The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.Nucleic acids research · 2012Article
- Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.Nature biotechnology · 2011Article
- Generation and analysis of expressed sequence tags from a cDNA library of the fruiting body of Ganoderma lucidum.Chinese medicine · 2010Article
- Chemical induction of silent biosynthetic pathway transcription in Aspergillus niger.Journal of industrial microbiology & biotechnology · 2009Article
- Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger.BMC genomics · 2009Article
- A method for construction, cloning and expression of intron-less gene from unannotated genomic DNA.Molecular biotechnology · 2008Article
- Generation, annotation and analysis of ESTs from Trichoderma harzianum CECT 2413.BMC genomics · 2006Article
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Authors and funding
9 authors at 1 institution in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundAspergillus niger, a saprophyte commonly found on decaying vegetation, is widely used and studied for industrial purposes. Despite its place as one of the most important organisms for commercial applications, the lack of available information about its genetic makeup limits research with this filamentous fungus.
resultsWe present here the analysis of 12,820 expressed sequence tags (ESTs) generated from A. niger cultured under seven different growth conditions. These ESTs identify about 5,108 genes of which 44.5% code for proteins sharing similarity (E < or = 1e(-5)) with GenBank entries of known function, 38% code for proteins that only share similarity with GenBank entries of unknown function and 17.5% encode proteins that do not have a GenBank homolog. Using the Gene Ontology hierarchy, we present a first classification of the A. niger proteins encoded by these genes and compare its protein repertoire with other well-studied fungal species. We have established a searchable web-based database that includes the EST and derived contig sequences and their annotation. Details about this project and access to the annotated A. niger database are available.
conclusionThis EST collection and its annotation provide a significant resource for fundamental and applied research with A. niger. The gene set identified in this manuscript will be highly useful in the annotation of the genome sequence of A. niger, the genes described in the manuscript, especially those encoding hydrolytic enzymes will provide a valuable source for researchers interested in enzyme properties and applications.
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