Evidence map›Paper›PMID 16455896›Full record

ArticleJournal of clinical microbiology2006

Sequencing of hsp65 distinguishes among subsets of the Mycobacterium avium complex.

Christine Y Turenne, Makeda Semret, Debby V Cousins, Desmond M Collins, Marcel A Behr

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

  1. Article
  2. Population structure ofMicrobial genomics · 2025
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  4. An unusual genetic switch controlsbioRxiv : the preprint server for biology · 2025
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  8. Evidence ofFrontiers in veterinary science · 2025
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  9. Culture-independent detection ofFrontiers in veterinary science · 2025
    Article
  10. Article
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  13. Article
  14. Article
  15. Genetic Involvement ofInternational journal of molecular sciences · 2021
    Review
  16. Article
  17. Genomic features ofGigaByte (Hong Kong, China) · 2021
    Article
  18. Article
  19. Current clinical microbiology reports · 2020
    Article
  20. Differential Genotyping ofMicroorganisms · 2020
    Review

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Christine Y TurenneDivision of Infectious Diseases and Medical Microbiology, A5-156, Montreal General Hospital, 1650 Cedar Avenue, Montreal, QC H3G 1A4 Canada.
Makeda Semret
Debby V Cousins
Desmond M Collins
Marcel A Behr

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mycobacterium avium complex consists of epidemiologically distinct subsets. The classification of these subsets is complicated by a number of factors, including the ambiguous results obtained with phenotypic and genetic assays and the recent appreciation that human and avian strains appear to be distinct. In previous work, sequencing based on a 441-bp portion of the hsp65 gene has proven to efficiently classify isolates within the Mycobacterium genus but provides low resolution for distinguishing among members of the M. avium complex. Therefore, in this study, we have targeted the more variable 3' region of the hsp65 gene to determine whether it can effectively discriminate M. avium complex isolates at the levels of species and subspecies. Primers designed for this target consistently generated amplicons for all organisms classified as M. avium complex. Sequences obtained indicate that M. intracellulare is genetically divergent from M. avium organisms, and distinct sequevars were obtained for M. avium subsets, including M. avium subsp. avium (bird type), M. avium subsp. hominissuis, and M. avium subsp. paratuberculosis. In addition, sequence differences served to distinguish bovine from ovine strains of M. avium subsp. paratuberculosis. A unique profile for M. avium subsp. silvaticum was not obtained. These results indicate that sequencing the 3' region of the hsp65 gene can simply and unambiguously distinguish species and subspecies of the M. avium complex.

Indexed as

Bacterial Typing TechniquesSequence Analysis, DNAAnimalsBacterial ProteinsCattleChaperonin 60ChaperoninsDNA PrimersHumansMolecular Sequence DataMycobacterium avium ComplexMycobacterium avium-intracellulare InfectionPolymerase Chain ReactionPolymorphism, Single NucleotideBacterial ProteinsChaperonin 60ChaperoninsDNA Primersheat-shock protein 65, Mycobacterium

Identifiers

PMID16455896
PMCPMC1392684

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.