Evidence map›Paper›PMID 16455892›Full record

ArticleJournal of clinical microbiology2006

Application of pulsed-field gel electrophoresis to identify potential outbreaks of campylobacteriosis in New Zealand.

Brent Gilpin, Angela Cornelius, Beth Robson, Naomi Boxall, Alan Ferguson, Carolyn Nicol, Tom Henderson

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Occurrence and Multidrug Resistance ofFoods (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Brent GilpinInstitute of Environmental Science & Research Limited, Christchurch Science Centre, P.O. Box 29-181, Christchurch, New Zealand. brent.gilpin@esr.cri.nz.
Angela Cornelius
Beth Robson
Naomi Boxall
Alan Ferguson
Carolyn Nicol
Tom Henderson

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since 2002, New Zealand's incidence of campylobacteriosis has exceeded 300 cases per 100,000 people per annum. To evaluate genetic variation in human isolates, 183 Campylobacter isolates were collected from a single clinical laboratory in Christchurch: 77 during an 8-week period in spring, and the rest 3 months later over a second 8-week period in autumn. Isolates were identified to the species level and subtyped using Penner serotyping (Campylobacter jejuni only) and pulsed-field gel electrophoresis (PFGE) using both SmaI and KpnI. Approximately two-thirds of the isolates could be grouped into clusters of between 2 and 26 isolates with indistinguishable SmaI and KpnI patterns. Less than 10% of the isolates were of the same type between the two sampling periods. The epidemiological relevance of the PFGE clusters was supported by temporal clustering, some spatial clustering, and some statistically significant demographic similarities among cases in a cluster. Conversely, patient cases yielding isolates which did not cluster with isolates from other cases were more likely to report recent overseas travel and less likely to live within larger urban centers. To identify whether these clusters actually represent common-source outbreaks, however, would require the detailed, rapid, and reiterative epidemiological investigation of cases within a PFGE cluster. The combined and timely application of subtyping and epidemiological investigation would appear to be a promising strategy for understanding campylobacteriosis in New Zealand.

Indexed as

Disease OutbreaksCampylobacterCampylobacter InfectionsCluster AnalysisDeoxyribonucleases, Type II Site-SpecificElectrophoresis, Gel, Pulsed-FieldHumansNew ZealandSerotypingSpecies SpecificityCCCGGG-specific type II deoxyribonucleasesDeoxyribonucleases, Type II Site-SpecificGGTACC-specific type II deoxyribonucleases

Identifiers

PMID16455892
PMCPMC1392692

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.