Evidence map›Paper›PMID 16452624›Full record

ArticleProtein science : a publication of the Protein Society2006

Genetic selection for protein solubility enabled by the folding quality control feature of the twin-arginine translocation pathway.

Adam C Fisher, Woojin Kim, Matthew P DeLisa

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Protein science : a publication of the Protein Society, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 118 citations in OpenAlex.

  1. Review
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  9. Directed evolution methods for overcoming trade-offs between protein activity and stability.AIChE journal. American Institute of Chemical Engineers · 2020
    Article
  10. Article
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  13. Directed evolution to improve protein folding in vivo.Current opinion in structural biology · 2018
    Review
  14. Trade-offs between enzyme fitness and solubility illuminated by deep mutational scanning.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Adam C FisherSchool of Chemical and Biomolecular Engineering, 254 Olin Hall, Cornell University, Ithaca, NY 14853, USA.
Woojin Kim
Matthew P DeLisa
Cornell University · USPrinceton University · US

Funding

A new technology platform for studying protein functionR21CA132223 · NCI · CORNELL UNIVERSITY · PI DELISA, MATTHEW P · 2008 to 2009
$399k
NCI NIH HHS R21 CA132223
6 · The paper itself

Abstract

One of the most vexing problems facing structural genomics efforts and the biotechnology enterprise in general is the inability to efficiently produce functional proteins due to poor folding and insolubility. Additionally, protein misfolding and aggregation has been linked to a number of human diseases, such as Alzheimer's. Thus, a robust cellular assay that allows for direct monitoring, manipulation, and improvement of protein folding could have a profound impact. We report the development and characterization of a genetic selection for protein folding and solubility in living bacterial cells. The basis for this assay is the observation that protein transport through the bacterial twin-arginine translocation (Tat) pathway depends on correct folding of the protein prior to transport. In this system, a test protein is expressed as a tripartite fusion between an N-terminal Tat signal peptide and a C-terminal TEM1 beta-lactamase reporter protein. We demonstrate that survival of Escherichia coli cells on selective medium expressing a Tat-targeted test protein/beta-lactamase fusion correlates with the solubility of the test protein. Using this assay, we isolated solubility-enhanced variants of the Alzheimer's Abeta42 peptide from a large combinatorial library of Abeta42 sequences, thereby confirming that our assay is a highly effective selection tool for soluble proteins. By allowing the bacterial Tat pathway to exert folding quality control on expressed target protein sequences, we have generated a powerful tool for monitoring protein folding and solubility in living cells, for molecular engineering of solubility-enhanced proteins or for the isolation of factors and/or cellular conditions that stabilize aggregation-prone proteins.

Indexed as

Amino Acid SequenceAmyloid beta-Peptidesbeta-LactamasesEscherichia coliEscherichia coli ProteinsMembrane Transport ProteinsMolecular Sequence DataPeptide FragmentsPeptide LibraryProtein EngineeringProtein FoldingProtein Sorting SignalsProtein TransportRecombinant Fusion ProteinsSequence AlignmentSolubilityAmyloid beta-Peptidesamyloid beta-protein (1-42)beta-Lactamasesbeta-lactamase TEM-1Escherichia coli ProteinsMembrane Transport ProteinsPeptide FragmentsPeptide LibraryProtein Sorting SignalsRecombinant Fusion Proteinstwin-arginine translocase complex, E coli

Identifiers

PMID16452624
PMCPMC2249766
OpenAlexW2155272154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.