Evidence map›Paper›PMID 16452507›Full record

ArticleGenes & development2006

Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.

Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Ryo Morishita, Shinichi Hoshino, Mutsuhito Ohno, Gideon Dreyfuss, Shigeo Ohno

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 385 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
385citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

385 citing papers in PubMed, 1 synthesis or guideline pooled it, 636 citations in OpenAlex.

  1. Pooled it
  2. Review
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  5. Review
  6. Article
  7. Nonsense-mediated mRNA decay: friend or foe in cancer biology?Cell communication and signaling : CCS · 2026
    Review
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  9. Review
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  14. Review
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  18. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  19. Review
  20. Article

325 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Isao KashimaDepartment of Molecular Biology, Yokohama City University School of Medicine, Yokohama 236-0004, Japan.
Akio Yamashita
Natsuko Izumi
Naoyuki Kataoka
Ryo Morishita
Shinichi Hoshino
Mutsuhito Ohno
Gideon Dreyfuss
Shigeo Ohno
Howard Hughes Medical Institute · USNagoya City University · JPUniversity of Pennsylvania · USYokohama City University · JPCellFree Sciences (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism that degrades mRNA containing premature termination codons (PTCs). In mammalian cells, recognition of PTCs requires translation and depends on the presence on the mRNA with the splicing-dependent exon junction complex (EJC). While it is known that a key event in the triggering of NMD is phosphorylation of the trans-acting factor, Upf1, by SMG-1, the relationship between Upf1 phosphorylation and PTC recognition remains undetermined. Here we show that SMG-1 binds to the mRNA-associated components of the EJC, Upf2, Upf3b, eIF4A3, Magoh, and Y14. Further, we describe a novel complex that contains the NMD factors SMG-1 and Upf1, and the translation termination release factors eRF1 and eRF3 (SURF). Importantly, an association between SURF and the EJC is required for SMG-1-mediated Upf1 phosphorylation and NMD. Thus, the SMG-1-mediated phosphorylation of Upf1 occurs on the association of SURF with EJC, which provides the link between the EJC and recognition of PTCs and triggers NMD.

Indexed as

Codon, NonsenseExonsHeLa CellsHumansMetalloendopeptidasesModels, BiologicalMultienzyme ComplexesPeptide Termination FactorsPhosphorylationProtein BindingProtein BiosynthesisProtein KinasesRibonucleoproteinsRNA-Binding ProteinsRNA HelicasesRNA, MessengerCodon, NonsenseETF1 protein, humanmessenger ribonucleoproteinMetalloendopeptidasesMultienzyme ComplexesO-sialoglycoprotein endopeptidasepeptide-chain-release factor 3Peptide Termination FactorsProtein KinasesRBM8A protein, humanRibonucleoproteinsRNA-Binding ProteinsRNA HelicasesRNA, MessengerTrans-ActivatorsTranscription FactorsUPF1 protein, humanUPF2 protein, human

Identifiers

PMID16452507
PMCPMC1361706
OpenAlexW1997980793

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.