Evidence map›Paper›PMID 16452440›Full record

ArticleJournal of bacteriology2006

Tetrapyrrole biosynthesis in Rhodobacter capsulatus is transcriptionally regulated by the heme-binding regulatory protein, HbrL.

James L Smart, Carl E Bauer

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Quantification of labile heme in live malaria parasites using a genetically encoded biosensor.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  4. Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  5. Article
  6. Controlling the delicate balance of tetrapyrrole biosynthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

James L SmartDepartment of Biology, Indiana University, Bloomington, Indiana 47405, USA.
Carl E Bauer
Indiana University Bloomington · US

Funding

Prokaryotic gene regulation by light and oxygenR37GM040941 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BAUER, CARL EUGENE · 2006 to 2016
$5.4M
PROKARYOTIC GENE REGULATION BY LIGHT AND OXYGENR01GM040941 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BAUER, CARL EUGENE · 1994 to 2020
$3.3M
GENETIC ANALYSIS OF MG-TETRAPYRROLE BIOSYNTHESISR01GM053940 · NIGMS · INDIANA UNIVERSITY BLOOMINGTON · PI BAUER, CARL EUGENE · 1996 to 2005
$1.0M
NIGMS NIH HHS GM53940NIGMS NIH HHS R01 GM040941NIGMS NIH HHS R01 GM053940NIGMS NIH HHS R37 GM040941
6 · The paper itself

Abstract

We demonstrate that the expression of hem genes in Rhodobacter capsulatus is transcriptionally repressed in response to the exogenous addition of heme. A high-copy suppressor screen for regulators of hem gene expression resulted in the identification of an LysR-type transcriptional regulator, called HbrL, that regulates hem promoters in response to the availability of heme. HbrL is shown to activate the expression of hemA and hemZ in the absence of exogenous hemin and repress hemB expression in the presence of exogenous hemin. Heterologously expressed HbrL apoprotein binds heme b and is purified with bound heme b when expressed in the presence of 5-aminolevulinic acid. Electrophoretic gel shift analysis demonstrated that HbrL binds the promoter region of hemA, hemB, and hemZ as well as its own promoter and that the presence of heme increases the binding affinity of HbrL to hemB.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticAmino Acid SequenceBacterial ProteinsConsensus SequenceHemeMolecular Sequence DataPromoter Regions, GeneticRhodobacter capsulatusTetrapyrrolesBacterial ProteinsHemeTetrapyrroles

Identifiers

PMID16452440
PMCPMC1367214
OpenAlexW2101559738

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.