Evidence map›Paper›PMID 16452429›Full record

ArticleJournal of bacteriology2006

Genetic diversity in Mycobacterium ulcerans isolates from Ghana revealed by a newly identified locus containing a variable number of tandem repeats.

Markus Hilty, Dorothy Yeboah-Manu, Daniel Boakye, Ernestina Mensah-Quainoo, Simona Rondini, Esther Schelling, David Ofori-Adjei, Françoise Portaels, Jakob Zinsstag, Gerd Pluschke

Abstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Detection ofApplied and environmental microbiology · 2025
    Article
  2. Review
  3. Variable Number Tandem Repeat Profiling ofFrontiers in microbiology · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Genotyping Tools forMycobacterial diseases : tuberculosis & leprosy · 2014
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Markus HiltySwiss Tropical Institute, Socinstrasse 57, CH 4002 Basel, Switzerland. Markus.Hilty@unibas.ch
Dorothy Yeboah-Manu
Daniel Boakye
Ernestina Mensah-Quainoo
Simona Rondini
Esther Schelling
David Ofori-Adjei
Françoise Portaels
Jakob Zinsstag
Gerd Pluschke

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular typing methods used so far for Mycobacterium ulcerans isolates have not been able to identify genetic differences among isolates from Africa. This apparent lack of genetic diversity among M. ulcerans isolates is indicative of a clonal population structure. We analyzed the genetic diversity of 72 African isolates, including 57 strains from Ghana, by variable number of tandem repeat (VNTR) typing based on a newly identified polymorphic locus designated ST1 and the previously described locus MIRU 1. Three different genotypes were found in Ghana, demonstrating for the first time the genetic diversity of M. ulcerans in an African country. While the ST1/MIRU 1 allele combination BD/BAA seems to dominate in Africa, it was only rarely found in isolates from Ghana, where the combination BD/B was dominant and observed in all districts studied. A third variant genotype (C/BAA) was found only in the Amansie-West district. The results indicate that new genetic variants of M. ulcerans emerged and spread within Ghana and support the potential of VNTR-based typing for genotyping of M. ulcerans.

Indexed as

AfricaAllelesBase SequenceGenetic VariationGhanaMolecular Sequence DataMycobacterium ulceransSpecies SpecificityTandem Repeat Sequences

Identifiers

PMID16452429
PMCPMC1367230

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.