Evidence map›Paper›PMID 16452139›Full record

ArticleGenetics2006

Efficient gene targeting in Drosophila with zinc-finger nucleases.

Kelly Beumer, Gargi Bhattacharyya, Marina Bibikova, Jonathan K Trautman, Dana Carroll

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 237 citations in OpenAlex.

  1. Review
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  11. Antioxidant Therapy in Parkinson's Disease: Insights fromAntioxidants (Basel, Switzerland) · 2020
    Review
  12. Article
  13. Review
  14. Review
  15. Nucleosomes inhibit target cleavage by CRISPR-Cas9 in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  16. Review
  17. Review
  18. Review
  19. Imaging Specific Genomic DNA in Living Cells.Annual review of biophysics · 2016
    Review
  20. Review

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kelly BeumerDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112, USA.
Gargi Bhattacharyya
Marina Bibikova
Jonathan K Trautman
Dana Carroll
University of Utah · USLouisiana State University · US

Funding

Chimeric Nucleases for Gene Targeting in DrosophilaR01GM058504 · NIGMS · UNIVERSITY OF UTAH · PI CARROLL, DANA · 1999 to 2003
$919k
NIGMS NIH HHS R01 GM058504NIGMS NIH HHS R01 GM58504
6 · The paper itself

Abstract

This report describes high-frequency germline gene targeting at two genomic loci in Drosophila melanogaster, y and ry. In the best case, nearly all induced parents produced mutant progeny; 25% of their offspring were new mutants and most of these were targeted gene replacements resulting from homologous recombination (HR) with a marked donor DNA. The procedure that generates these high frequencies relies on cleavage of the target by designed zinc-finger nucleases (ZFNs) and production of a linear donor in situ. Increased induction of ZFN expression led to higher frequencies of gene targeting, demonstrating the beneficial effect of activating the target. In the absence of a homologous donor DNA, ZFN cleavage led to the recovery of new mutants at three loci-y, ry and bw-through nonhomologous end joining (NHEJ) after cleavage. Because zinc fingers can be directed to a broad range of DNA sequences and targeting is very efficient, this approach promises to allow genetic manipulation of many different genes, even in cases where the mutant phenotype cannot be predicted.

Indexed as

Zinc FingersAnimalsBase SequenceDNADrosophila melanogasterEndoribonucleasesGene TargetingGerm-Line MutationModels, GeneticMolecular Sequence DataMutagenesisMutationRecombination, GeneticTemperatureDNAEndoribonucleases

Identifiers

PMID16452139
PMCPMC1456366
OpenAlexW2015911939

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.