Evidence map›Paper›PMID 16449639›Full record

ArticleMolecular and cellular biology2006

Developmental profile of H19 differentially methylated domain (DMD) deletion alleles reveals multiple roles of the DMD in regulating allelic expression and DNA methylation at the imprinted H19/Igf2 locus.

Joanne L Thorvaldsen, Andrew M Fedoriw, Son Nguyen, Marisa S Bartolomei

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. DysregulatedeLife · 2022
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  4. Cyclic Strain PromotesCellular and molecular bioengineering · 2020
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  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. H19ICR mediated transcriptional silencing does not require target promoter methylation.Biochemical and biophysical research communications · 2016
    Article
  11. Article
  12. Mouse models of adrenocortical tumors.Molecular and cellular endocrinology · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Temporal and developmental requirements for the Prader-Willi imprinting center.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Joanne L ThorvaldsenDepartment of Cell and Developmental Biology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Andrew M Fedoriw
Son Nguyen
Marisa S Bartolomei
University of Pennsylvania · US

Funding

TRAINING PROGRAM IN DEVELOPMENTAL BIOLOGYT32HD007516 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI RAPER, JONATHAN A · 1998 to 2012
$5.6M
SEQUENCES CONTROLLING H19 GENE IMPRINTINGR01GM051279 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1994 to 2024
$5.1M
Sequences controlling H19 Gene ImprintingR37GM051279 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 2011 to 2020
$3.9M
NICHD NIH HHS T32 HD007516NICHD NIH HHS T32 HD-07516NIGMS NIH HHS GM51279NIGMS NIH HHS R01 GM051279NIGMS NIH HHS R37 GM051279
6 · The paper itself

Abstract

The differentially methylated domain (DMD) of the mouse H19 gene is a methylation-sensitive insulator that blocks access of the Igf2 gene to shared enhancers on the maternal allele and inactivates H19 expression on the methylated paternal allele. By analyzing H19 DMD deletion alleles H19DeltaDMD and H19Delta3.8kb-5'H19 in pre- and postimplantation embryos, we show that the DMD exhibits positive transcriptional activity and is required for H19 expression in blastocysts and full activation of H19 during subsequent development. We also show that the DMD is required to establish Igf2 imprinting by blocking access to shared enhancers when Igf2 monoallelic expression is initiated in postimplantation embryos and that the single remaining CTCF site of the H19DeltaDMD allele is unable to provide this function. Furthermore, our data demonstrate that sequence outside of the DMD can attract some paternal-allele-specific CpG methylation 5' of H19 in preimplantation embryos, although this methylation is not maintained during postimplantation in the absence of the DMD. Finally, we report a conditional allele floxing the 1.6-kb sequence deleted from the H19DeltaDMD allele and demonstrate that the DMD is required to maintain repression of the maternal Igf2 allele and the full activity of the paternal Igf2 allele in neonatal liver.

Indexed as

Genomic ImprintingAllelesAnimalsAnimals, NewbornBase SequenceBlastocystDNADNA MethylationEnhancer Elements, GeneticFemaleGene Expression Regulation, DevelopmentalInsulin-Like Growth Factor IIMaleMiceMice, Inbred C57BLMice, TransgenicDNAH19 long non-coding RNAInsulin-Like Growth Factor IIRNA, Long NoncodingRNA, Untranslated

Identifiers

PMID16449639
PMCPMC1367202
OpenAlexW2118458940

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.