Evidence map›Paper›PMID 16444740›Full record

ArticleProteins2006

Two types of transmembrane homomeric interactions in the integrin receptor family are evolutionarily conserved.

Xin Lin, Suet Mien Tan, S K Alex Law, Jaume Torres

Abstract read
In one paragraph

Article in Proteins, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Peptide-Drug Conjugates: A New Hope for Cancer.Journal of peptide science : an official publication of the European Peptide Society · 2025
    Review
  2. Article
  3. Article
  4. Interaction and conformational dynamics of membrane-spanning protein helices.Protein science : a publication of the Protein Society · 2009
    Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xin LinSchool of Biological Sciences, Nanyang Technological University, 637551, Singapore.
Suet Mien Tan
S K Alex Law
Jaume Torres

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Integrins are heterodimers, but recent in vitro and in vivo experiments suggest that they are also able to associate through their transmembrane domains to form homomeric interactions. Two fundamental questions are the biological relevance of these aggregates and their form of interaction in the membrane domain. Although in vitro experiments have shown the involvement of a GxxxG-like motif, several crosslinking in vivo data are consistent with an almost opposite form of interaction between the transmembrane alpha-helices. In the present work, we have explored these two questions using molecular dynamics simulations for all available integrin types. We have tested the hypothesis that homomeric interactions are evolutionary conserved, and essential for the cell, using conservative substitutions to filter out nonnative interactions. Our results show that two models, one involving a GxxxG-like motif (model I) and an almost opposite form of interaction (model II) are conserved across all alpha and beta integrin types, both in homodimers and homotrimers, with different specificities. No conserved interaction was found for homotetramers. Our results are completely independent from experimental data, both during molecular dynamics simulations and in the selection of the correct models. We rationalize previous seemingly conflicting findings regarding the nature of integrin interhelical homomeric interactions.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsComputational BiologyConserved SequenceCross-Linking ReagentsDimerizationEvolution, MolecularHumansIntegrin alpha ChainsIntegrin beta ChainsIntegrinsMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataMutagenesisCross-Linking ReagentsIntegrin alpha ChainsIntegrin beta ChainsIntegrins

Identifiers

PMID16444740
PMCPMC7168044

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.