Evidence map›Paper›PMID 16443663›Full record

ArticleBiophysical journal2006

Solutes modify a conformational transition in a membrane transport protein.

Miyeon Kim, Qi Xu, Gail E Fanucci, David S Cafiso

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Simple Selection Procedure to Distinguish between Static and Flexible Loops.International journal of molecular sciences · 2020
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Osmolytes modulate conformational exchange in solvent-exposed regions of membrane proteins.Protein science : a publication of the Protein Society · 2010
    Article
  13. Osmolyte perturbation reveals conformational equilibria in spin-labeled proteins.Protein science : a publication of the Protein Society · 2009
    Article
  14. Article
  15. Article
  16. Sequence of late molecular events in the activation of rhodopsin.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  17. Substrate-dependent transmembrane signaling in TonB-dependent transporters is not conserved.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  18. Article
  19. Structural and dynamical changes in an alpha-subunit of a heterotrimeric G protein along the activation pathway.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Miyeon KimDepartment of Chemistry and Biophysics Program, University of Virginia, Charlottesville, 22904-4319, USA.
Qi Xu
Gail E Fanucci
David S Cafiso
University of Virginia · USUniversity of Florida · US

Funding

MOLECULAR MECHANISMS OF MEMBRANE TRANSPORTR01GM035215 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI DAVID S CAFISO · 1985 to 2026
$7.3M
NIGMS NIH HHS GM35215NIGMS NIH HHS R01 GM035215
6 · The paper itself

Abstract

The bacterial outer-membrane vitamin B(12) transporter, BtuB, undergoes a dramatic order-to-disorder transition in its N-terminal energy-coupling motif (Ton box) upon substrate binding. Here, site-directed spin labeling (SDSL) is used to show that a range of solutes prevents this conformational change when ligand is bound to BtuB, resulting in a more ordered Ton box structure. For each solute examined, the data indicate that solutes effectively block this conformational transition through an osmotic mechanism. The molecular weight dependence of this solute effect has been examined for a series of polyethylene glycols, and a sharp molecular weight cutoff is observed. This cutoff indicates that solutes are preferentially excluded from a cavity within the protein as well as the protein surface. Furthermore, the sensitivity of the conformational change to solution osmolality is consistent with a structural model predicted by SDSL. When the Ton box is unfolded by detergents or mutations (rather than by ligand binding), solutes, such as polyethylene glycols and salts, also induce a more structured compacted conformation. These results suggest that conformational changes in this class of outer membrane transporters, which involve modest energy differences and changes in hydration, may be modulated by a range of solutes, including solutes typically used in protein crystallization.

Indexed as

Models, MolecularBacterial Outer Membrane ProteinsDehydrationElectron Spin Resonance SpectroscopyEscherichia coli ProteinsMembrane Transport ProteinsMutationOsmolar ConcentrationOsmotic PressurePolyethylene GlycolsProtein ConformationProtein FoldingProtein Structure, TertiaryRecombinant ProteinsVitamin B 12Bacterial Outer Membrane ProteinsBtuB protein, E coliEscherichia coli ProteinsMembrane Transport ProteinsPolyethylene GlycolsRecombinant ProteinsVitamin B 12

Identifiers

PMID16443663
PMCPMC1414566
OpenAlexW2044186322

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.